Factsheet for TraesCS6A01G373900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G411600.1	Wheat	peroxisome	98.17	98.17
TraesCS6D01G358100.1	Wheat	peroxisome	97.55	97.55
Os02t0805600-01	Rice	plasma membrane	88.99	88.72
OQU85913	Sorghum	cytosol	85.32	85.06
Zm00001d018418_P002	Maize	cytosol	85.93	82.65
TraesCS6A01G374000.1	Wheat	cytosol	80.73	81.73
Zm00001d051987_P001	Maize	cytosol	74.92	80.07
GSMUA_Achr4P15790_001	Banana	cytosol	76.15	76.62
PGSC0003DMT400057744	Potato	cytosol	74.31	74.77
Solyc02g078940.2.1	Tomato	extracellular	74.01	74.46
KRH10765	Soybean	cytosol, peroxisome, plastid	72.78	73.23
AT4G21580.1	Thale cress	cytosol	70.34	70.77
CDX82839	Canola	cytosol	70.34	70.77
Bra013540.1-P	Field mustard	cytosol	69.72	70.15
CDX79076	Canola	cytosol, peroxisome, plastid	40.06	65.17
VIT_09s0002g07820.t01	Wine grape	cytosol	21.71	61.74
TraesCS2A01G277700.1	Wheat	plastid	24.46	35.4
TraesCS5A01G280700.1	Wheat	plastid	29.36	27.99
TraesCS2A01G277900.1	Wheat	golgi	28.13	27.46
TraesCS5A01G542400.1	Wheat	plastid	31.19	26.98
TraesCS5A01G280800.1	Wheat	cytosol, peroxisome, plastid	27.52	26.79
TraesCS5A01G014100.1	Wheat	plastid	27.22	26.49
TraesCS7A01G142200.1	Wheat	cytosol, peroxisome, plastid	22.63	25.69
TraesCS6A01G246800.1	Wheat	peroxisome	25.99	24.57
TraesCS6A01G133100.1	Wheat	plastid	27.22	23.24
TraesCS3A01G292000.1	Wheat	mitochondrion	24.16	21.76

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	PANTHER:PTHR43006	PANTHER:PTHR43006:SF7
InterPro:Quinone_OxRdtase_PIG3	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGRFAMs:TIGR02824	EnsemblPlantsGene:TraesCS6A01G373900
EnsemblPlants:TraesCS6A01G373900.1	TIGR:cd05276	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:+:596895507..596897262

Molecular Weight (calculated)

34139.4 Da

IEP (calculated)

6.043

GRAVY (calculated)

0.206

Length

327 amino acids

Sequence
(BLAST)

001: MRVVAIASPG GPEALQVREV DDLPAPGEGE VLVAVAAAGV NRADTVQRQG RYPPPPGASP YPGLECSGTI LALGANVPPR WAVGDQVCAL LTGGGYAEKV
101: VVPAGQLLPV PEGVSLADAA GLPEVACTVW STVFMTSHLS PGESFLIHGG SSGIGTFAIQ IAKHLGVKVF VTAGSEEKLA ACKDLGADVC INYKTEDFVA
201: RIKEETDGKG VDVILDNIGA SYLQRNLNSL AVDGRLFIIG FMGGVTTEVN LQAMLARRLT IQAAGLRNRS LANKAQIVSE VEKNVWPAVV SGKVKPVIYK
301: TFPLSEAAES HKLMETSSHI GKILLIP

Best Arabidopsis Sequence Match ( AT4G21580.1 )
(BLAST)

001: MKAIVISEPG KPEVLQLRDV ADPEVKDDEV LIRVLATALN RADTLQRLGL YNPPPGSSPY LGLECSGTIE SVGKGVSRWK VGDQVCALLS GGGYAEKVSV
101: PAGQIFPIPA GISLKDAAAF PEVACTVWST VFMMGRLSVG ESFLIHGGSS GIGTFAIQIA KHLGVRVFVT AGSDEKLAAC KELGADVCIN YKTEDFVAKV
201: KAETDGKGVD VILDCIGAPY LQKNLDSLNF DGRLCIIGLM GGANAEIKLS SLLPKRLTVL GAALRPRSPE NKAVVVREVE KNVWPAIEAG KVKPVIYKYL
301: PLSQAAEGHS LMESSNHIGK ILLET

Arabidopsis Description

AT4g21580/F18E5_200 [Source:UniProtKB/TrEMBL;Acc:O65423]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.