Factsheet for Solyc02g078940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
extracellular: 22892874
extracellular: 29876421

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057744	Potato	cytosol	98.15	98.15
VIT_00s0301g00170.t01	Wine grape	cytosol	78.46	79.94
GSMUA_Achr4P15790_001	Banana	cytosol	77.85	77.85
KRH10765	Soybean	cytosol, peroxisome, plastid	76.62	76.62
VIT_00s0301g00180.t01	Wine grape	cytosol	76.62	76.62
TraesCS6D01G358100.1	Wheat	peroxisome	75.69	75.23
TraesCS6A01G373900.1	Wheat	golgi	74.46	74.01
TraesCS6B01G411600.1	Wheat	peroxisome	74.46	74.01
OQU85913	Sorghum	cytosol	74.46	73.78
Bra013540.1-P	Field mustard	cytosol	73.54	73.54
TraesCS6D01G358200.1	Wheat	cytosol	73.85	73.39
CDX82839	Canola	cytosol	73.23	73.23
AT4G21580.1	Thale cress	cytosol	72.92	72.92
TraesCS6B01G411700.1	Wheat	cytosol	72.92	72.48
Os02t0805600-01	Rice	plasma membrane	72.31	71.65
Zm00001d018418_P002	Maize	cytosol	73.54	70.29
Zm00001d051987_P001	Maize	cytosol	65.85	69.93
TraesCS6A01G374000.1	Wheat	cytosol	68.62	69.04
CDX79076	Canola	cytosol, peroxisome, plastid	42.15	68.16
HORVU6Hr1G088160.7	Barley	cytosol, mitochondrion, peroxisome	72.92	67.91
VIT_14s0036g00560.t01	Wine grape	cytosol	27.08	55.35
VIT_09s0002g07840.t01	Wine grape	cytosol	48.0	53.98
VIT_09s0002g07690.t01	Wine grape	cytosol	29.85	53.59
VIT_09s0002g07580.t01	Wine grape	peroxisome	48.0	50.0
VIT_09s0002g07620.t01	Wine grape	cytosol	44.0	48.47
VIT_09s0002g07760.t01	Wine grape	cytosol	33.54	42.08
VIT_09s0070g00550.t01	Wine grape	cytosol	19.38	40.13
Solyc09g059030.2.1	Tomato	plastid	27.08	26.75
Solyc09g059040.2.1	Tomato	plastid	26.77	26.44
Solyc06g034120.2.1	Tomato	extracellular	30.46	25.78
Solyc09g059020.2.1	Tomato	cytosol, extracellular, peroxisome	20.31	24.09
Solyc05g005480.2.1	Tomato	plastid	28.62	23.97
Solyc03g095320.1.1	Tomato	cytosol, plastid	6.46	23.86
Solyc03g095360.2.1	Tomato	plastid	25.23	23.56
Solyc12g014050.1.1	Tomato	plastid	22.77	18.69

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4B9B8
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	PANTHER:PTHR43006	PANTHER:PTHR43006:SF7
InterPro:Quinone_OxRdtase_PIG3	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc02g078940.2	EnsemblPlants:Solyc02g078940.2.1
TIGRFAMs:TIGR02824	UniParc:UPI00027684AF	:	:	:	:

Description

No Description!

Coordinates

chr2:+:43553428..43557752

Molecular Weight (calculated)

34671.1 Da

IEP (calculated)

7.272

GRAVY (calculated)

0.039

Length

325 amino acids

Sequence
(BLAST)

001: MKAVVITSPG GPEVLKLQEV EDPQIKDDEI LIKIAATALN RADTLQRQGK YPPPKGDSEY PGLECSGTVE AVGKEVTRWK IGDQVCALIG GGGYAEKVAV
101: PTGQVLPIPS GVSLQDAASF PEVVCTVWST IFMTSKLSSG ETFLIHGGSS GIGTFAIQMA KCLGVKVFIT AGSEEKLSAC KELGADVCIN YKTEDFVTRI
201: KEETGGKGVD VILDNIGGSY FQRNLDSLNV DGRLFIIGFM GGTVTQVNLG CLLARRLTVQ AAGLRSRSPK NKAQIVREVE KNVWPAIAAG KVKPVVYKYF
301: PLAEAAEAHQ LMESSNHIGK ILLTV

Best Arabidopsis Sequence Match ( AT4G21580.1 )
(BLAST)

001: MKAIVISEPG KPEVLQLRDV ADPEVKDDEV LIRVLATALN RADTLQRLGL YNPPPGSSPY LGLECSGTIE SVGKGVSRWK VGDQVCALLS GGGYAEKVSV
101: PAGQIFPIPA GISLKDAAAF PEVACTVWST VFMMGRLSVG ESFLIHGGSS GIGTFAIQIA KHLGVRVFVT AGSDEKLAAC KELGADVCIN YKTEDFVAKV
201: KAETDGKGVD VILDCIGAPY LQKNLDSLNF DGRLCIIGLM GGANAEIKLS SLLPKRLTVL GAALRPRSPE NKAVVVREVE KNVWPAIEAG KVKPVIYKYL
301: PLSQAAEGHS LMESSNHIGK ILLET

Arabidopsis Description

AT4g21580/F18E5_200 [Source:UniProtKB/TrEMBL;Acc:O65423]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.