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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 2
  • peroxisome 1
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
MultiLoc:peroxisome
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
 plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400044064 Potato cytosol 94.83 94.83
Solyc09g059030.2.1 Tomato plastid 87.23 87.23
Solyc09g059020.2.1 Tomato cytosol, extracellular, peroxisome 69.3 83.21
VIT_07s0151g00200.t01 Wine grape cytosol, mitochondrion, plastid 58.97 78.23
Bra001207.1-P Field mustard cytosol 76.9 76.9
CDX80695 Canola cytosol 76.9 76.9
CDY34537 Canola cytosol 76.9 76.9
AT4G13010.1 Thale cress cytosol 75.99 75.99
KRH23756 Soybean endoplasmic reticulum 72.04 72.26
VIT_07s0151g00260.t01 Wine grape cytosol 72.04 70.12
KRH44933 Soybean cytosol, peroxisome 62.31 68.79
VIT_07s0151g00090.t01 Wine grape mitochondrion 77.51 66.58
TraesCS2A01G277900.1 Wheat golgi 66.87 65.67
GSMUA_AchrUn_... Banana cytosol, peroxisome, plastid 52.89 65.66
TraesCS2B01G295300.1 Wheat golgi 66.57 65.37
TraesCS2D01G276900.1 Wheat plastid 66.26 65.07
TraesCS2A01G277700.1 Wheat plastid 44.68 65.04
TraesCS3B01G548400.1 Wheat cytosol, peroxisome, plastid 42.25 63.76
GSMUA_Achr11P... Banana plasma membrane 63.83 63.64
GSMUA_Achr2P06100_001 Banana mitochondrion 47.11 63.27
TraesCS7D01G143400.1 Wheat cytosol 59.57 63.02
OQU83589 Sorghum cytosol 59.57 61.83
EES10573 Sorghum plastid 64.13 61.34
TraesCS7B01G043400.1 Wheat cytosol, peroxisome, plastid 62.61 61.31
GSMUA_Achr6P27730_001 Banana cytosol 47.11 61.26
GSMUA_Achr2P06110_001 Banana mitochondrion 62.01 61.26
TraesCS5D01G287700.1 Wheat golgi 62.31 61.01
TraesCS5B01G279900.1 Wheat golgi 62.31 61.01
TraesCS5A01G280800.1 Wheat cytosol, peroxisome, plastid 62.31 61.01
OQU89739 Sorghum cytosol 62.61 60.41
TraesCS5D01G524500.1 Wheat mitochondrion, peroxisome, plastid 62.31 60.29
TraesCS2B01G295100.1 Wheat plastid 58.97 59.69
TraesCS2B01G295200.1 Wheat plastid 59.27 59.27
TraesCS7A01G142200.1 Wheat cytosol, peroxisome, plastid 51.67 59.03
Os09t0502500-01 Rice plasma membrane 60.79 58.82
TraesCS2D01G276600.1 Wheat cytosol, mitochondrion, plastid 58.05 58.77
TraesCS5A01G014100.1 Wheat plastid 59.88 58.63
TraesCS2D01G276700.1 Wheat mitochondrion 58.97 58.61
Os04t0359100-01 Rice plasma membrane 58.66 58.13
TraesCS3D01G494500.1 Wheat cytosol, peroxisome, plastid 58.05 58.05
Zm00001d021025_P001 Maize mitochondrion, peroxisome, plastid 60.79 57.8
Zm00001d025166_P001 Maize plastid 64.74 57.72
Os09t0503100-01 Rice plasma membrane 59.88 56.94
Os04t0358000-01 Rice endoplasmic reticulum 53.5 55.52
TraesCS5B01G279700.1 Wheat plastid 57.45 55.43
EER97004 Sorghum cytosol, peroxisome, plastid 56.23 54.25
TraesCS5A01G280700.1 Wheat plastid 56.23 53.94
Os04t0372700-01 Rice plasma membrane 20.97 53.49
Os09t0503000-01 Rice cytosol, mitochondrion, plastid 26.14 52.44
Zm00001d006069_P001 Maize peroxisome 58.05 51.34
Zm00001d042260_P002 Maize mitochondrion 57.75 51.08
TraesCS5D01G287300.2 Wheat plastid 56.23 50.27
Os04t0359700-00 Rice cytosol, mitochondrion, peroxisome, plastid 54.71 49.86
Solyc05g005480.2.1 Tomato plastid 33.74 28.61
HORVU5Hr1G034150.2 Barley nucleus 28.88 28.19
Solyc02g078940.2.1 Tomato extracellular 26.44 26.77
Solyc03g095320.1.1 Tomato cytosol, plastid 6.69 25.0
Solyc03g095360.2.1 Tomato plastid 25.23 23.85
Solyc12g014050.1.1 Tomato plastid 27.96 23.23
Solyc06g034120.2.1 Tomato extracellular 24.62 21.09
Protein Annotations
Gene3D:3.40.50.720Gene3D:3.90.180.10MapMan:35.1InterPro:ADH_NGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:GroES-like_sfUniProt:K4CTJ3
InterPro:NAD(P)-bd_dom_sfPFAM:PF08240PFAM:PF13602InterPro:PKS_ERPANTHER:PTHR44013SMART:SM00829
SUPFAM:SSF50129SUPFAM:SSF51735EnsemblPlantsGene:Solyc09g059040.2EnsemblPlants:Solyc09g059040.2.1UniParc:UPI000276B564SEG:seg
Description
No Description!
Coordinates
chr9:-:53050984..53054540
Molecular Weight (calculated)
34473.8 Da
IEP (calculated)
9.585
GRAVY (calculated)
0.025
Length
329 amino acids
Sequence
(BLAST)
001: MSGKIMHAVQ YHSYGGGAAA LKHVEVPVPT PNKDEVLVKV EATSINPLDS KIQKGMLRPF LPSKFPFIPT TDVAGEVVEV GSNVKSFKAG DKVVAMLSTK
101: SGGGLAEYVV PKDSLTVSRP AEVSAAEGAG LVIAGLTALQ ALVNPAEVKL DGTGPRKNIL VTAASGGVGH YAVQLAKLGN AHVTATCGAR NIDFVKSLGA
201: DEILDYKTPE GAALKSPSGQ KYDAVINCTT GIPWSTFEPN LSSSGKVIDL TPGASSMLTF AVKKLTFSKK QLVPFLVNAN KENLELLVKL VKEGKLKTVI
301: DSKFPLSKAE DAWSRSIDGH ATGKILVEP
Best Arabidopsis Sequence Match ( AT4G13010.1 )
(BLAST)
001: MAGKLMHALQ YNSYGGGAAG LEHVQVPVPT PKSNEVCLKL EATSLNPVDW KIQKGMIRPF LPRKFPCIPA TDVAGEVVEV GSGVKNFKAG DKVVAVLSHL
101: GGGGLAEFAV ATEKLTVKRP QEVGAAEAAA LPVAGLTALQ ALTNPAGLKL DGTGKKANIL VTAASGGVGH YAVQLAKLAN AHVTATCGAR NIEFVKSLGA
201: DEVLDYKTPE GAALKSPSGK KYDAVVHCAN GIPFSVFEPN LSENGKVIDI TPGPNAMWTY AVKKITMSKK QLVPLLLIPK AENLEFMVNL VKEGKVKTVI
301: DSKHPLSKAE DAWAKSIDGH ATGKIIVEP
Arabidopsis Description
CEQORHChloroplast envelope quinone oxidoreductase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SV68]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.