Factsheet for Solyc06g034120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 29876421

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	82.03	96.33
Bra035926.1-P	Field mustard	cytosol	70.31	83.33
VIT_09s0002g08480.t01	Wine grape	cytosol	70.57	81.87
CDY16814	Canola	cytosol	19.01	81.11
VIT_09s0002g08470.t01	Wine grape	cytosol	68.49	78.98
CDX87218	Canola	cytosol	18.49	78.89
KRH27530	Soybean	nucleus	73.96	75.53
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, vacuole	55.47	74.22
Os03t0101600-01	Rice	plasma membrane	65.1	72.46
AT5G61510.1	Thale cress	plastid	72.14	68.23
Zm00001d027276_P001	Maize	extracellular	65.36	67.47
CDY68244	Canola	mitochondrion	31.77	67.03
HORVU4Hr1G088610.1	Barley	plastid	65.36	66.58
KXG40429	Sorghum	plastid	66.15	66.15
TraesCS5A01G542400.1	Wheat	plastid	65.1	66.14
TraesCS4D01G365600.1	Wheat	plastid	65.36	65.71
TraesCS4B01G371900.1	Wheat	mitochondrion, plastid	65.1	64.6
CDY72063	Canola	plastid	32.29	59.05
Solyc02g078940.2.1	Tomato	extracellular	25.78	30.46
Solyc03g095320.1.1	Tomato	cytosol, plastid	5.73	25.0
Solyc03g095360.2.1	Tomato	plastid	22.4	24.71
Solyc09g059030.2.1	Tomato	plastid	21.09	24.62
Solyc09g059040.2.1	Tomato	plastid	21.09	24.62
Solyc09g059020.2.1	Tomato	cytosol, extracellular, peroxisome	15.89	22.26
Solyc05g005480.2.1	Tomato	plastid	22.14	21.91
Solyc12g014050.1.1	Tomato	plastid	21.61	20.96

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003960	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009644	GO:GO:0009987	GO:GO:0016491	GO:GO:0017091
GO:GO:0034599	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4C4N6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107
PFAM:PF08240	InterPro:PKS_ER	PANTHER:PTHR42975	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
EnsemblPlantsGene:Solyc06g034120.2	EnsemblPlants:Solyc06g034120.2.1	UniParc:UPI0002765B45	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:23695526..23703054

Molecular Weight (calculated)

41271.1 Da

IEP (calculated)

8.941

GRAVY (calculated)

0.070

Length

384 amino acids

Sequence
(BLAST)

001: MRLTSLRCYN LLLPNSFISR FTRAITTSNQ KGRKCIPLQT TTVRLAVRAH SVSPASMVKA IRVHELGGPE VLKWEDVELG DPKDGEIRVK NKVIGLNFID
101: IYFRKGVYKA AAFPFTPGME AVGVVTAVGP GLTGRKVGDI VAYAGGVMGA YAEEQILPAD KVVPVPPSID PIVVASILLK GMTAQFLLRR CFKVERGHAV
201: LVHAAAGGVG SLLCQWANAL GATVIGTVST KEKAAQAKDD GCHHVIIYKE EDFVTRVNEI TSGQGVEVVY DSVGKDTFQG SLDCLKTRGY MVSFGQSSGS
301: PDPVPLSALA VKSLFLTRPS MMHYTMTRDE LLETAGEVFA NVASGVLRVR VNHTYPLSQA AQAHTDLESR KTSGSVVLIP DDAQ

Best Arabidopsis Sequence Match ( AT5G61510.1 )
(BLAST)

001: MAALTLHHHH HHRHHSCLQA SGHLSRRLYH RIFSSFPRNP VKDLNFRLSL ADFSSFSLST RGTVFAVRAL STVAVEESSE KKMVKGIRVY EHGGPEVLKW
101: EDVEVGEPKE GEIRVKNKAI GLNFIDVYFR KGVYKPASMP FTPGMEAVGE VVAVGSGLTG RMIGDLVAYA GNPMGAYAEE QILPADKVVP VPSSIDPIVA
201: ASIMLKGMTA QFLLRRCFKV EPGHTILVHA AAGGVGSLLC QWANALGATV IGTVSTNEKA AQAKEDGCHH VIMYKNEDFV SRVNDITSGK GVNVVYDSVG
301: KDTFKGSLAC LKSRGYMVSF GQSSGSPDPI PLSDLAPKSL FLTRPSMMHY NETRDELLEC AGEVFANVTS GILKARVNHK YPLSRVADAH ADLENRITSG
401: SVVLLP

Arabidopsis Description

At5g61510 [Source:UniProtKB/TrEMBL;Acc:A1L4Y4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.