Factsheet for PGSC0003DMT400055608

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035926.1-P	Field mustard	cytosol	82.26	83.02
Solyc06g034120.2.1	Tomato	extracellular	96.33	82.03
VIT_09s0002g08480.t01	Wine grape	cytosol	82.26	81.27
CDY16814	Canola	cytosol	21.71	78.89
VIT_09s0002g08470.t01	Wine grape	cytosol	79.82	78.38
CDX87218	Canola	cytosol	21.1	76.67
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, vacuole	65.44	74.56
KRH27530	Soybean	nucleus	85.02	73.94
Os03t0101600-01	Rice	plasma membrane	74.01	70.14
Zm00001d027276_P001	Maize	extracellular	76.15	66.94
AT5G61510.1	Thale cress	plastid	82.26	66.26
KXG40429	Sorghum	plastid	76.45	65.1
TraesCS5A01G542400.1	Wheat	plastid	75.23	65.08
CDY68244	Canola	mitochondrion	36.09	64.84
HORVU4Hr1G088610.1	Barley	plastid	74.62	64.72
TraesCS4D01G365600.1	Wheat	plastid	75.23	64.4
TraesCS4B01G371900.1	Wheat	mitochondrion, plastid	74.92	63.31
CDY72063	Canola	plastid	36.39	56.67
PGSC0003DMT400057744	Potato	cytosol	29.66	29.85
PGSC0003DMT400044064	Potato	cytosol	25.38	25.23
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	24.77	24.62
PGSC0003DMT400022514	Potato	cytosol	24.46	24.24
PGSC0003DMT400044065	Potato	cytosol	24.16	23.8
PGSC0003DMT400079606	Potato	cytosol	25.99	21.91
PGSC0003DMT400039777	Potato	mitochondrion	24.46	21.8
PGSC0003DMT400090732	Potato	plastid	9.79	14.55

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009644	GO:GO:0016491	GO:GO:0055114
InterPro:GroES-like_sf	UniProt:M1BY78	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG400021595
PGSC:PGSC0003DMG400021595	EnsemblPlants:PGSC0003DMT400055608	InterPro:PKS_ER	PANTHER:PTHR42975	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0002960D95	SEG:seg	:	:	:

Description

Ted2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021595]

Coordinates

chr6:+:35812536..35819547

Molecular Weight (calculated)

34850.1 Da

IEP (calculated)

6.949

GRAVY (calculated)

0.088

Length

327 amino acids

Sequence
(BLAST)

001: MVKAIRVHEL GGPEVLKWED VELGDPKDGE IRVKNKAIGL NFIDIYFRKG VYKAAAFPFT PGMEAVGVVT AVGPGLTGRK VGDIVAYAGG PMGAYAEEQI
101: LPADKVVPVP PSIDPIVVAS ILLKGMTAQF LLRRCFKVER GHTVLVHAAA GGVGSLLCQW ANALGATVIG TVSTKEKADQ ARDDGCHHVI IYKEEDFVNR
201: VNEITSGQGV EVVYDSVGKD TFQGSLDCLK TRGYMVSFGQ SSGSPDPVPL SALAVKSLFL TRPSMMHYTV TRDELLATAG EVFANVASGV LRVRMNHTYP
301: LSQAVQAHAD LESRKTSGSV VLIPDGA

Best Arabidopsis Sequence Match ( AT5G61510.1 )
(BLAST)

001: MAALTLHHHH HHRHHSCLQA SGHLSRRLYH RIFSSFPRNP VKDLNFRLSL ADFSSFSLST RGTVFAVRAL STVAVEESSE KKMVKGIRVY EHGGPEVLKW
101: EDVEVGEPKE GEIRVKNKAI GLNFIDVYFR KGVYKPASMP FTPGMEAVGE VVAVGSGLTG RMIGDLVAYA GNPMGAYAEE QILPADKVVP VPSSIDPIVA
201: ASIMLKGMTA QFLLRRCFKV EPGHTILVHA AAGGVGSLLC QWANALGATV IGTVSTNEKA AQAKEDGCHH VIMYKNEDFV SRVNDITSGK GVNVVYDSVG
301: KDTFKGSLAC LKSRGYMVSF GQSSGSPDPI PLSDLAPKSL FLTRPSMMHY NETRDELLEC AGEVFANVTS GILKARVNHK YPLSRVADAH ADLENRITSG
401: SVVLLP

Arabidopsis Description

At5g61510 [Source:UniProtKB/TrEMBL;Acc:A1L4Y4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.