Factsheet for PGSC0003DMT400079606

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005480.2.1	Tomato	plastid	94.59	94.59
HORVU6Hr1G025630.2	Barley	cytosol	56.44	83.91
VIT_01s0127g00740.t01	Wine grape	plastid	73.97	76.13
KRG99340	Soybean	plastid	71.65	70.38
KRH45668	Soybean	nucleus	71.65	70.03
AT1G23740.1	Thale cress	plastid	69.33	69.69
CDY61544	Canola	plastid	68.56	69.09
Bra024616.1-P	Field mustard	plastid	68.3	68.83
CDY47631	Canola	plastid	67.78	68.31
Os08t0379400-02	Rice	plastid	67.78	67.44
TraesCS6D01G122800.1	Wheat	plastid	66.49	67.36
TraesCS6B01G161600.1	Wheat	plastid	65.98	66.84
TraesCS6A01G133100.1	Wheat	plastid	65.72	66.58
Zm00001d032332_P001	Maize	plastid	64.95	65.28
KXG25078	Sorghum	plastid	65.98	64.0
HORVU6Hr1G025730.2	Barley	plastid	66.75	61.23
PGSC0003DMT400044064	Potato	cytosol	28.61	33.74
PGSC0003DMT400022514	Potato	cytosol	27.32	32.12
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	26.8	31.61
PGSC0003DMT400044065	Potato	cytosol	26.8	31.33
PGSC0003DMT400057744	Potato	cytosol	23.71	28.31
PGSC0003DMT400039777	Potato	mitochondrion	26.03	27.52
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	21.91	25.99
PGSC0003DMT400090732	Potato	plastid	12.11	21.36

Protein Annotations

EntrezGene:102604604	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009409
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009941
GO:GO:0010319	GO:GO:0016491	GO:GO:0035671	GO:GO:0035798	GO:GO:0048046	GO:GO:0055114
InterPro:GroES-like_sf	UniProt:M1D249	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	EnsemblPlantsGene:PGSC0003DMG400030998
PGSC:PGSC0003DMG400030998	EnsemblPlants:PGSC0003DMT400079606	InterPro:PKS_ER	ScanProsite:PS01162	PANTHER:PTHR44573	InterPro:Quin_OxRdtase/zeta-crystal_CS
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000295B60F	RefSeq:XP_006365236.1	SEG:seg

Description

Alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400030998]

Coordinates

chr5:-:8383814..8387263

Molecular Weight (calculated)

41035.2 Da

IEP (calculated)

6.983

GRAVY (calculated)

0.009

Length

388 amino acids

Sequence
(BLAST)

001: METLLSSTTL QLKPLHPPSS FSSLHSPFSS TSALRVKGSR KAETFIQRSQ FSTVLPVRVS ASSQAAAAQT STSISIPSEM KAWSYTDYGS VDVLKLESNV
101: AVPDIKEDQV LIKVVAAALN PIDFKRRLGK FKATDSPLPT VPGYDVAGVV VKVGSQVKEL KEGDEVYGDI NEKAIDGPNQ FGSLAEYTAV EEKLVALKPK
201: NLSFAEAAAL PLVIETAYEG LEKAGFSAGQ SILVLGGAGG VGSLVIQLAK HVFGASKVAA TSSTGKLELL KSLGADLAID YTKDNFEDLP DKFDVVYDSV
301: GQGEKAVKAV KEGGSVVVLT GAVTPPGFRF VVTSNGEMLK KLNPYLESGK VKPVIDPKGP FPFDKVVDAF SHLETGRATG KVVIYPIP

Best Arabidopsis Sequence Match ( AT1G23740.1 )
(BLAST)

001: MNAALATTTA TTPVLRRETP LLHYCSLTTK SPVYQINRVR FGSCVQTVSK KFLKISASSQ SASAAVNVTA DASIPKEMKA WVYSDYGGVD VLKLESNIVV
101: PEIKEDQVLI KVVAAALNPV DAKRRQGKFK ATDSPLPTVP GYDVAGVVVK VGSAVKDLKE GDEVYANVSE KALEGPKQFG SLAEYTAVEE KLLALKPKNI
201: DFAQAAGLPL AIETADEGLV RTEFSAGKSI LVLNGAGGVG SLVIQLAKHV YGASKVAATA STEKLELVRS LGADLAIDYT KENIEDLPDK YDVVFDAIGM
301: CDKAVKVIKE GGKVVALTGA VTPPGFRFVV TSNGDVLKKL NPYIESGKVK PVVDPKGPFP FSRVADAFSY LETNHATGKV VVYPIP

Arabidopsis Description

AORNADPH-dependent alkenal/one oxidoreductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUC1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.