Factsheet for PGSC0003DMT400044064

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g059040.2.1	Tomato	plastid	94.83	94.83
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	89.36	89.36
VIT_07s0151g00200.t01	Wine grape	cytosol, mitochondrion, plastid	58.97	78.23
Bra001207.1-P	Field mustard	cytosol	78.12	78.12
CDX80695	Canola	cytosol	78.12	78.12
CDY34537	Canola	cytosol	78.12	78.12
AT4G13010.1	Thale cress	cytosol	77.2	77.2
PGSC0003DMT400022514	Potato	cytosol	74.77	74.55
KRH23756	Soybean	endoplasmic reticulum	73.56	73.78
PGSC0003DMT400044065	Potato	cytosol	72.04	71.39
VIT_07s0151g00260.t01	Wine grape	cytosol	72.64	70.71
KRH44933	Soybean	cytosol, peroxisome	63.22	69.8
VIT_07s0151g00090.t01	Wine grape	mitochondrion	78.12	67.1
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	53.5	66.42
TraesCS2A01G277900.1	Wheat	golgi	67.17	65.97
TraesCS2D01G276900.1	Wheat	plastid	66.87	65.67
TraesCS2B01G295300.1	Wheat	golgi	66.87	65.67
TraesCS2A01G277700.1	Wheat	plastid	44.68	65.04
GSMUA_Achr11P...	Banana	plasma membrane	64.44	64.24
GSMUA_Achr2P06100_001	Banana	mitochondrion	47.72	64.08
TraesCS3B01G548400.1	Wheat	cytosol, peroxisome, plastid	42.25	63.76
GSMUA_Achr6P27730_001	Banana	cytosol	48.63	63.24
TraesCS7D01G143400.1	Wheat	cytosol	59.57	63.02
TraesCS5A01G280800.1	Wheat	cytosol, peroxisome, plastid	62.92	61.61
EES10573	Sorghum	plastid	64.13	61.34
TraesCS5D01G287700.1	Wheat	golgi	62.61	61.31
TraesCS7B01G043400.1	Wheat	cytosol, peroxisome, plastid	62.61	61.31
TraesCS5B01G279900.1	Wheat	golgi	62.61	61.31
GSMUA_Achr2P06110_001	Banana	mitochondrion	62.01	61.26
OQU83589	Sorghum	cytosol	58.97	61.2
TraesCS5D01G524500.1	Wheat	mitochondrion, peroxisome, plastid	63.22	61.18
OQU89739	Sorghum	cytosol	63.22	61.0
Os09t0502500-01	Rice	plasma membrane	61.7	59.71
TraesCS2B01G295200.1	Wheat	plastid	59.57	59.57
TraesCS2B01G295100.1	Wheat	plastid	58.66	59.38
TraesCS2D01G276700.1	Wheat	mitochondrion	59.27	58.91
TraesCS7A01G142200.1	Wheat	cytosol, peroxisome, plastid	51.37	58.68
Zm00001d021025_P001	Maize	mitochondrion, peroxisome, plastid	61.7	58.67
TraesCS2D01G276600.1	Wheat	cytosol, mitochondrion, plastid	57.75	58.46
TraesCS5A01G014100.1	Wheat	plastid	59.57	58.33
TraesCS3D01G494500.1	Wheat	cytosol, peroxisome, plastid	58.05	58.05
Os04t0359100-01	Rice	plasma membrane	58.36	57.83
Os09t0503100-01	Rice	plasma membrane	60.49	57.51
Zm00001d025166_P001	Maize	plastid	64.44	57.45
TraesCS5B01G279700.1	Wheat	plastid	58.66	56.6
Os04t0372700-01	Rice	plasma membrane	21.88	55.81
EER97004	Sorghum	cytosol, peroxisome, plastid	57.75	55.72
Os04t0358000-01	Rice	endoplasmic reticulum	53.19	55.2
TraesCS5A01G280700.1	Wheat	plastid	57.14	54.81
Os09t0503000-01	Rice	cytosol, mitochondrion, plastid	26.14	52.44
Zm00001d042260_P002	Maize	mitochondrion	58.97	52.15
Zm00001d006069_P001	Maize	peroxisome	58.66	51.88
TraesCS5D01G287300.2	Wheat	plastid	57.14	51.09
Os04t0359700-00	Rice	cytosol, mitochondrion, peroxisome, plastid	54.41	49.58
PGSC0003DMT400090732	Potato	plastid	28.88	43.18
HORVU5Hr1G034150.2	Barley	nucleus	29.48	28.78
PGSC0003DMT400079606	Potato	cytosol	33.74	28.61
PGSC0003DMT400057744	Potato	cytosol	26.14	26.46
PGSC0003DMT400039777	Potato	mitochondrion	29.48	26.43
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	25.23	25.38

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	ProteinID:ABA81857	ProteinID:ABA81857.1	InterPro:ADH_N
EMBL:DQ207849	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1BFJ5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602
EnsemblPlantsGene:PGSC0003DMG400017096	PGSC:PGSC0003DMG400017096	EnsemblPlants:PGSC0003DMT400044064	InterPro:PKS_ER	PANTHER:PTHR44013	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000296C04F	SEG:seg	:	:

Description

Ripening regulated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017096]

Coordinates

chr9:-:31697234..31702615

Molecular Weight (calculated)

34620.0 Da

IEP (calculated)

9.587

GRAVY (calculated)

0.011

Length

329 amino acids

Sequence
(BLAST)

001: MAGKIMQAVQ YDSYGGGAAA LKHVEVPVPT PKKDEVLVKV EATSINPLDC KIQKGMFRPL LPPKFPFIPA TDVAGEVVEV GSNVKSFKAG DKVVAMLSTK
101: SGGGLAEYAV PKESLTVSRP AEVSAAEGAG LLIAGLTALQ ALVNPAEVKL DGTGPRKNIL VTAASGGVGH YAVQLAKLGN AHVTATCGAR NFDFVKSLGA
201: DEILDYKTPE GAALKSPSGQ KYDAVINCTT GIPWSTFEPN LSSSGKVIDL TPGASSMWTF AVKKLTFSKK QLVPFLVNAK KENLELLVRL VKEGKLKTVI
301: DSKFPLSKAE DAWSRSIDGH ATGKIFVEP

Best Arabidopsis Sequence Match ( AT4G13010.1 )
(BLAST)

001: MAGKLMHALQ YNSYGGGAAG LEHVQVPVPT PKSNEVCLKL EATSLNPVDW KIQKGMIRPF LPRKFPCIPA TDVAGEVVEV GSGVKNFKAG DKVVAVLSHL
101: GGGGLAEFAV ATEKLTVKRP QEVGAAEAAA LPVAGLTALQ ALTNPAGLKL DGTGKKANIL VTAASGGVGH YAVQLAKLAN AHVTATCGAR NIEFVKSLGA
201: DEVLDYKTPE GAALKSPSGK KYDAVVHCAN GIPFSVFEPN LSENGKVIDI TPGPNAMWTY AVKKITMSKK QLVPLLLIPK AENLEFMVNL VKEGKVKTVI
301: DSKHPLSKAE DAWAKSIDGH ATGKIIVEP

Arabidopsis Description

CEQORHChloroplast envelope quinone oxidoreductase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SV68]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.