CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	73.94	85.02
CDY16814	Canola	cytosol	19.95	83.33
Bra035926.1-P	Field mustard	cytosol	71.54	83.02
VIT_09s0002g08480.t01	Wine grape	cytosol	72.61	82.48
CDX87218	Canola	cytosol	19.41	81.11
VIT_09s0002g08470.t01	Wine grape	cytosol	68.88	77.78
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, vacuole	56.65	74.22
Solyc06g034120.2.1	Tomato	extracellular	75.53	73.96
Os03t0101600-01	Rice	plasma membrane	63.56	69.28
Zm00001d027276_P001	Maize	extracellular	68.35	69.09
AT5G61510.1	Thale cress	plastid	74.47	68.97
HORVU4Hr1G088610.1	Barley	plastid	66.22	66.05
KXG40429	Sorghum	plastid	67.02	65.62
TraesCS5A01G542400.1	Wheat	plastid	65.96	65.61
TraesCS4D01G365600.1	Wheat	plastid	65.69	64.66
TraesCS4B01G371900.1	Wheat	mitochondrion, plastid	65.43	63.57
CDY68244	Canola	mitochondrion	30.59	63.19
KRH36398	Soybean	cytosol	27.13	61.82
CDY72063	Canola	plastid	31.91	57.14
KRH10765	Soybean	cytosol, peroxisome, plastid	26.86	31.08
KRG93311	Soybean	cytosol	23.67	27.64
KRG93309	Soybean	cytosol	22.87	26.88
KRG93310	Soybean	cytosol	22.61	26.56
KRH46629	Soybean	cytosol	23.14	26.44
KRH07194	Soybean	nucleus	22.34	26.33
KRH56616	Soybean	cytosol	7.45	26.17
KRH64241	Soybean	nucleus	23.94	26.01
KRG99627	Soybean	cytosol	22.61	25.84
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	23.67	25.65
KRH23756	Soybean	endoplasmic reticulum	22.34	25.61
KRG93306	Soybean	cytosol	21.54	25.16
KRH44933	Soybean	cytosol, peroxisome	19.68	24.83
KRH45668	Soybean	nucleus	24.47	23.17
KRH27297	Soybean	mitochondrion	22.07	22.8
KRG99340	Soybean	plastid	23.94	22.78
KRG93308	Soybean	extracellular	10.11	21.47
KRH22019	Soybean	mitochondrion	21.28	20.67

Protein Annotations

EntrezGene:100793768	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	EMBL:ACUP02007813	InterPro:ADH_C
InterPro:ADH_N	EnsemblPlantsGene:GLYMA_12G241100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003960	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0017091
GO:GO:0034599	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1LVH0	EnsemblPlants:KRH27530	ProteinID:KRH27530
ProteinID:KRH27530.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	PANTHER:PTHR42975
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI0001CAE39A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:39958302..39963045

Molecular Weight (calculated)

40192.4 Da

IEP (calculated)

7.533

GRAVY (calculated)

0.064

Length

376 amino acids

Sequence
(BLAST)

001: MSFSRLLRVQ NPGLCLLFNY SQPLTSSSSS SLPLTRDRAA LTFTTKVSYS SDMVKAIRVH ELGGPQVLKW EDVEIGDPKE GEVRVRNKAI GVNFIDVYFR
101: KGVYKAPSFP FTPGMEAVGV VTAVGAGLTG RQVGDLVAYA GQPMGSYAEE QILPANKVVP VPSSIDPAVA ASIILKGMTT QFLLRRCFQV EPGHTILVHA
201: AAGGVGSLLC QWANALGATV IGTVSNKEKA AQAKEDGCHH VIIYKEEDFV ARVNEITSGN GVEVVYDSVG KDTFEGSLAC LKLRGYMVSF GQSSGSPDPV
301: PLSSLAAKSL FLTRPSLMQY VVTRDELLEA AGEVFANVAS GVLKVRVNHT YPLSEAAKAH EDLENRKTSG SVVLIP

Best Arabidopsis Sequence Match ( AT5G61510.1 )
(BLAST)

001: MAALTLHHHH HHRHHSCLQA SGHLSRRLYH RIFSSFPRNP VKDLNFRLSL ADFSSFSLST RGTVFAVRAL STVAVEESSE KKMVKGIRVY EHGGPEVLKW
101: EDVEVGEPKE GEIRVKNKAI GLNFIDVYFR KGVYKPASMP FTPGMEAVGE VVAVGSGLTG RMIGDLVAYA GNPMGAYAEE QILPADKVVP VPSSIDPIVA
201: ASIMLKGMTA QFLLRRCFKV EPGHTILVHA AAGGVGSLLC QWANALGATV IGTVSTNEKA AQAKEDGCHH VIMYKNEDFV SRVNDITSGK GVNVVYDSVG
301: KDTFKGSLAC LKSRGYMVSF GQSSGSPDPI PLSDLAPKSL FLTRPSMMHY NETRDELLEC AGEVFANVTS GILKARVNHK YPLSRVADAH ADLENRITSG
401: SVVLLP

Arabidopsis Description

At5g61510 [Source:UniProtKB/TrEMBL;Acc:A1L4Y4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.