CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
peroxisome 4
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56460.1	KRH42483	AT2G01950.1	19000166
AT3G56460.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	97.11	96.83
VIT_13s0067g00160.t01	Wine grape	peroxisome	79.48	79.71
CDX67648	Canola	extracellular	50.58	78.12
AT3G56460.1	Thale cress	cytosol	78.03	77.59
CDY32016	Canola	peroxisome	77.17	76.72
Solyc03g095360.2.1	Tomato	plastid	75.14	74.71
GSMUA_AchrUn_...	Banana	plastid	74.57	74.14
Solyc03g095320.1.1	Tomato	cytosol, plastid	17.92	70.45
EES12890	Sorghum	plastid	70.23	70.23
HORVU6Hr1G063770.1	Barley	peroxisome	68.5	68.5
Os05t0313500-01	Rice	peroxisome, plastid	65.9	68.06
Zm00001d002246_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	68.79	68.0
TraesCS6A01G246800.1	Wheat	peroxisome	67.63	67.63
TraesCS6D01G229000.1	Wheat	peroxisome	67.05	67.05
TraesCS6B01G277800.1	Wheat	peroxisome	67.05	67.05
Bra003241.1-P	Field mustard	cytosol	75.72	56.1
KRG93309	Soybean	cytosol	25.72	27.81
KRG93310	Soybean	cytosol	25.72	27.81
KRG93311	Soybean	cytosol	25.72	27.64
KRH07194	Soybean	nucleus	24.57	26.65
KRH10765	Soybean	cytosol, peroxisome, plastid	24.86	26.46
KRH56616	Soybean	cytosol	8.09	26.17
KRG99627	Soybean	cytosol	23.7	24.92
KRH46629	Soybean	cytosol	23.41	24.62
KRG93306	Soybean	cytosol	22.54	24.22
KRH23756	Soybean	endoplasmic reticulum	22.83	24.09
KRH27530	Soybean	nucleus	26.01	23.94
KRH36398	Soybean	cytosol	11.27	23.64
KRH27297	Soybean	mitochondrion	24.86	23.63
KRG93308	Soybean	extracellular	11.27	22.03
KRH22019	Soybean	mitochondrion	24.57	21.96
KRH44933	Soybean	cytosol, peroxisome	18.79	21.81
KRG99340	Soybean	plastid	24.57	21.52
KRH45668	Soybean	nucleus	24.28	21.16

Protein Annotations

EntrezGene:100817700	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	EMBL:ACUP02002750	InterPro:ADH_C
InterPro:ADH_N	EnsemblPlantsGene:GLYMA_04G224400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1JYD9
EnsemblPlants:KRH64241	ProteinID:KRH64241	ProteinID:KRH64241.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240
InterPro:PKS_ER	ScanProsite:PS01162	PANTHER:PTHR43677	PANTHER:PTHR43677:SF4	InterPro:Quin_OxRdtase/zeta-crystal_CS	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI0002339C45	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:49490788..49494778

Molecular Weight (calculated)

37077.4 Da

IEP (calculated)

9.787

GRAVY (calculated)

0.310

Length

346 amino acids

Sequence
(BLAST)

001: MEALLCRKLG DPTVSLEDNN SPIVLSKNHP IPQLDSPTAV RVRIKATSLN FANYLQILGK YQEKPSLPFI PGSDFSGFVD AVGPKVSNFR VGDAVCSFAA
101: LGSFAQFIVV DQSQLFQVPQ GCDLVAAGAL AVAFGTSHVA LVHRAQLSSG QVLLVLGAAG GVGLAAVQIG KACGAIVIAV ARGAEKVQLL KSLGVDHVVD
201: LGNENVTQSI KQFLQARRLK GIDVLYDPVG GKLTKESLRL LKWGAHILII GFASGEIPVI PANIALVKNW TVHGLYWGSY KIHRPGVLED SLKELLSWLA
301: RGLISIHISH SYPLSEAYLA FSAIKDRKVI GKVMIVFDEK TTRSKL

Best Arabidopsis Sequence Match ( AT3G56460.1 )
(BLAST)

001: MEALVCRKLG DPTATNPGSP ESPVEVSKTH PIPSLNSDTS VRVRVIATSL NYANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: DLGSFAQFIV ADQSRLFLVP ERCDMVAAAA LPVAFGTSHV ALVHRARLTS GQVLLVLGAA GGVGLAAVQI GKVCGAIVIA VARGTEKIQL LKSMGVDHVV
201: DLGTENVISS VKEFIKTRKL KGVDVLYDPV GGKLTKESMK VLKWGAQILV IGFASGEIPV IPANIALVKN WTVHGLYWGS YRIHQPNVLE DSIKELLSWL
301: SRGLITIHIS HTYSLSQANL AFGDLKDRKA IGKVMIALDH KTALSSKL

Arabidopsis Description

GroES-like zinc-binding alcohol dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.