CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56460.1	CDY03088	AT2G01950.1	19000166
AT3G56460.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67648	Canola	extracellular	63.22	98.21
AT3G56460.1	Thale cress	cytosol	90.23	90.23
KRH64241	Soybean	nucleus	76.72	77.17
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	76.72	76.95
VIT_13s0067g00160.t01	Wine grape	peroxisome	75.0	75.65
Solyc03g095360.2.1	Tomato	plastid	74.43	74.43
GSMUA_AchrUn_...	Banana	plastid	74.43	74.43
HORVU6Hr1G063770.1	Barley	peroxisome	67.82	68.21
EES12890	Sorghum	plastid	67.82	68.21
Zm00001d002246_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	68.1	67.71
TraesCS6B01G277800.1	Wheat	peroxisome	66.67	67.05
TraesCS6A01G246800.1	Wheat	peroxisome	66.09	66.47
TraesCS6D01G229000.1	Wheat	peroxisome	65.8	66.19
Os05t0313500-01	Rice	peroxisome, plastid	63.51	65.97
Solyc03g095320.1.1	Tomato	cytosol, plastid	16.67	65.91
CDY34537	Canola	cytosol	24.14	25.53
CDX80695	Canola	cytosol	24.14	25.53
CDX79076	Canola	cytosol, peroxisome, plastid	14.66	25.37
CDX82839	Canola	cytosol	22.99	24.62
CDX75808	Canola	mitochondrion	21.55	21.43
CDY61544	Canola	plastid	23.56	21.3
CDY16814	Canola	cytosol	5.46	21.11
CDX87218	Canola	cytosol	5.46	21.11
CDY47631	Canola	plastid	23.28	21.04
CDX82448	Canola	mitochondrion	20.98	20.86
CDY68244	Canola	mitochondrion	10.06	19.23
CDY72063	Canola	plastid	10.34	17.14
CDX98523	Canola	plastid	22.41	12.32
CDX97630	Canola	plastid	22.13	12.16

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	GO:A0A078H2L8	UniProt:A0A078H2L8	InterPro:ADH_C
InterPro:ADH_N	EnsemblPlants:CDY32016	ProteinID:CDY32016	ProteinID:CDY32016.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00050853001	InterPro:GroES-like_sf
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	PANTHER:PTHR43677	PANTHER:PTHR43677:SF4
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI0004EF01A1	SEG:seg	:

Description

BnaC06g15940DBnaC06g15940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2L8]

Coordinates

chrLK032284:-:252539..254474

Molecular Weight (calculated)

36980.4 Da

IEP (calculated)

9.463

GRAVY (calculated)

0.324

Length

348 amino acids

Sequence
(BLAST)

001: MEALVCRKLG DPTATEPGSP ESPVEVSKNH PIPPLTSDIA VRVKVTATSL NFANYLQILG KYQEKPPLPF IPGSDYSGVV DAIGPAVTKF RVGDRVCSFA
101: ALGSYAQFIV ADQSLLFLVP EGCDMIAAAA LPVAFGTSHV ALVHRARLTS GQVLMVLGAA GGVGLAAVQI GKICGAIVIA VARGSEKIQL LKSMGVDHVV
201: DLGSENVITS VKEFVKTRKL KGVDVLYDPV GGKLTKDSMK VLNWGAQILV IGFASGEVPL IPANIALVKN WTVHGLYWGS YKIHQPNVLD DSIRELLSWL
301: ARGLITIHIS HTYSLSQSNL AFGAIKDRKA IGKVMIALDH KATLSSKL

Best Arabidopsis Sequence Match ( AT3G56460.1 )
(BLAST)

001: MEALVCRKLG DPTATNPGSP ESPVEVSKTH PIPSLNSDTS VRVRVIATSL NYANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: DLGSFAQFIV ADQSRLFLVP ERCDMVAAAA LPVAFGTSHV ALVHRARLTS GQVLLVLGAA GGVGLAAVQI GKVCGAIVIA VARGTEKIQL LKSMGVDHVV
201: DLGTENVISS VKEFIKTRKL KGVDVLYDPV GGKLTKESMK VLKWGAQILV IGFASGEIPV IPANIALVKN WTVHGLYWGS YRIHQPNVLE DSIKELLSWL
301: SRGLITIHIS HTYSLSQANL AFGDLKDRKA IGKVMIALDH KTALSSKL

Arabidopsis Description

GroES-like zinc-binding alcohol dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.