CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, peroxisome, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	peroxisome
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56460.1	CDY03088	AT2G01950.1	19000166
AT3G56460.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32016	Canola	peroxisome	98.21	63.22
AT3G56460.1	Thale cress	cytosol	90.18	58.05
VIT_13s0067g00160.t01	Wine grape	peroxisome	78.57	51.01
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	79.02	51.01
KRH64241	Soybean	nucleus	78.12	50.58
GSMUA_AchrUn_...	Banana	plastid	77.23	49.71
Solyc03g095360.2.1	Tomato	plastid	76.34	49.14
Bra003241.1-P	Field mustard	cytosol	93.75	44.97
HORVU6Hr1G063770.1	Barley	peroxisome	69.2	44.8
Os05t0313500-01	Rice	peroxisome, plastid	66.96	44.78
EES12890	Sorghum	plastid	68.75	44.51
TraesCS6B01G277800.1	Wheat	peroxisome	68.3	44.22
Zm00001d002246_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	68.75	44.0
TraesCS6D01G229000.1	Wheat	peroxisome	67.86	43.93
TraesCS6A01G246800.1	Wheat	peroxisome	67.86	43.93
CDY16814	Canola	cytosol	8.93	22.22
CDX87218	Canola	cytosol	8.93	22.22
CDX80695	Canola	cytosol	22.32	15.2
CDY34537	Canola	cytosol	22.32	15.2
CDX82839	Canola	cytosol	20.54	14.15
CDX75808	Canola	mitochondrion	20.54	13.14
CDX82448	Canola	mitochondrion	19.64	12.57
CDY61544	Canola	plastid	20.09	11.69
CDY47631	Canola	plastid	19.64	11.43
CDX79076	Canola	cytosol, peroxisome, plastid	7.59	8.46
CDX97630	Canola	plastid	20.54	7.27
CDX98523	Canola	plastid	20.54	7.27
CDY68244	Canola	mitochondrion	2.68	3.3
CDY72063	Canola	plastid	2.68	2.86
Solyc03g095320.1.1	Tomato	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX67648	EnsemblPlantsGene:GSBRNA2T00098813001	Gene3D:3.90.180.10	GO:A0A078BXG4	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:ADH_C	InterPro:NAD(P)-bd_dom_sf
InterPro:PKS_ER	PANTHER:PTHR43677	PANTHER:PTHR43677:SF4	PFAM:PF00107	ProteinID:CDX67648	ProteinID:CDX67648.1
SEG:seg	SMART:SM00829	SUPFAM:SSF51735	UniParc:UPI0004EF0862	MapMan:50.1.3	:

Description

BnaA07g16880D

Coordinates

chrLK031787:-:1542313..1543949

Molecular Weight (calculated)

23805.6 Da

IEP (calculated)

10.445

GRAVY (calculated)

0.457

Length

224 amino acids

Sequence
(BLAST)

001: MIAAAALPVA FGTSHVALVH RARLTSGQVL MVLGAAGGVG LAAVQIGKIC GAIVIAVARG SEKIQLLKSM GVDHVVDLGS ENVITSVKEF VKTRKLKGVD
101: VLYDPVGGKL TKDSMKVLNW GAQILVIGFA SGEVPLIPAN IALVKNWTVH GLYWGSYKIH QPNVLDDSIR ELLSWLARGV ITMHISHTYS LSQANLAFGA
201: IKDRKVIGKV MIALDHKATL SSKL

Best Arabidopsis Sequence Match ( AT3G56460.1 )
(BLAST)

001: MEALVCRKLG DPTATNPGSP ESPVEVSKTH PIPSLNSDTS VRVRVIATSL NYANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: DLGSFAQFIV ADQSRLFLVP ERCDMVAAAA LPVAFGTSHV ALVHRARLTS GQVLLVLGAA GGVGLAAVQI GKVCGAIVIA VARGTEKIQL LKSMGVDHVV
201: DLGTENVISS VKEFIKTRKL KGVDVLYDPV GGKLTKESMK VLKWGAQILV IGFASGEIPV IPANIALVKN WTVHGLYWGS YRIHQPNVLE DSIKELLSWL
301: SRGLITIHIS HTYSLSQANL AFGDLKDRKA IGKVMIALDH KTALSSKL

Arabidopsis Description

GroES-like zinc-binding alcohol dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.