CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85387
CDX86259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	CDX85387	AT5G49010.1	21798944
AT3G15090.1	CDX86259	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001583.1-P	Field mustard	mitochondrion	97.14	97.14
CDX82448	Canola	mitochondrion	96.86	96.86
AT3G15090.1	Thale cress	mitochondrion	89.71	85.79
VIT_19s0014g01890.t01	Wine grape	mitochondrion	68.57	66.48
Os01t0753100-01	Rice	mitochondrion	68.29	65.48
PGSC0003DMT400039777	Potato	mitochondrion	67.71	64.58
GSMUA_Achr8P27200_001	Banana	mitochondrion	68.0	64.5
Zm00001d043432_P001	Maize	mitochondrion	66.86	64.46
KRH27297	Soybean	mitochondrion	65.71	63.19
HORVU3Hr1G072320.2	Barley	mitochondrion	65.43	63.09
TraesCS3D01G291700.2	Wheat	mitochondrion	65.14	62.81
TraesCS3B01G326600.1	Wheat	mitochondrion	64.86	62.53
TraesCS3A01G292000.1	Wheat	mitochondrion	64.0	61.71
GSMUA_Achr3P15520_001	Banana	mitochondrion	64.86	61.68
Solyc12g014050.1.1	Tomato	plastid	67.14	59.34
KRH22019	Soybean	mitochondrion	64.57	58.4
KXG33382	Sorghum	plastid	67.71	56.56
CDX98523	Canola	plastid	90.57	50.08
CDX97630	Canola	plastid	90.29	49.92
CDX80695	Canola	cytosol	26.0	27.66
CDY34537	Canola	cytosol	26.0	27.66
CDY61544	Canola	plastid	27.43	24.94
CDY47631	Canola	plastid	27.43	24.94
CDX79076	Canola	cytosol, peroxisome, plastid	13.71	23.88
CDY16814	Canola	cytosol	6.0	23.33
CDX82839	Canola	cytosol	20.86	22.46
CDX87218	Canola	cytosol	5.71	22.22
CDY32016	Canola	peroxisome	21.43	21.55
CDX67648	Canola	extracellular	13.14	20.54
CDY68244	Canola	mitochondrion	8.86	17.03
CDY72063	Canola	plastid	10.0	16.67

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.2	GO:A0A078CL65	InterPro:ADH_N	EnsemblPlants:CDX75808
ProteinID:CDX75808	ProteinID:CDX75808.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00123763001	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240
PFAM:PF13602	InterPro:PKS_ER	PANTHER:PTHR43482	PANTHER:PTHR43482:SF1	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0004EABC6A	SEG:seg	:	:	:

Description

BnaC03g38910D

Coordinates

chrLK031805:+:851775..853967

Molecular Weight (calculated)

37876.9 Da

IEP (calculated)

9.566

GRAVY (calculated)

-0.024

Length

350 amino acids

Sequence
(BLAST)

001: MRGMRSLRGS SKAVSIFRPA RLSSLRSIFT GCRAVMLPRF GGPEVLELRE NVPVPNLNPN EIRAGYGRSV FQPHLPIIIG RDVSGEVAAV GNSVKSFKVG
101: QEVFGALHPT ALRGTYTDYG VLSEEELTEK PASVSHVEAS AIPFAALTSW RALKSNARIL EGQRVLVFGG GGAVGFAAIQ IAVASGCHVT ASCVGQTRER
201: ILAAGAEQAV DYTTEDIEMV VKGKFDAVLD TIGRPETERI GINFLRKGGN YMTLQGEAAS LTDRYGFVVG LPLATSFLAK KKIQYQYSHG VDYWWTYMRA
301: DPEGLAEIKR LVGAGKLKIP VEKTFPITEV VAAHEAKEKK EIPGKVVLEL

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.