Factsheet for VIT_19s0014g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0077g00120.t01
VIT_05s0077g00290.t01
VIT_05s0077g00800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	VIT_05s0077g00120.t01	AT5G49010.1	21798944
AT3G15090.1	VIT_05s0077g00290.t01	AT5G49010.1	21798944
AT3G15090.1	VIT_05s0077g00800.t01	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039777	Potato	mitochondrion	77.84	76.57
KRH27297	Soybean	mitochondrion	76.18	75.55
GSMUA_Achr8P27200_001	Banana	mitochondrion	75.35	73.71
Os01t0753100-01	Rice	mitochondrion	73.96	73.15
Zm00001d043432_P001	Maize	mitochondrion	72.58	72.18
Solyc12g014050.1.1	Tomato	plastid	77.84	70.96
GSMUA_Achr3P15520_001	Banana	mitochondrion	72.3	70.92
TraesCS3A01G292000.1	Wheat	mitochondrion	71.19	70.8
TraesCS3B01G326600.1	Wheat	mitochondrion	71.19	70.8
HORVU3Hr1G072320.2	Barley	mitochondrion	71.19	70.8
TraesCS3D01G291700.2	Wheat	mitochondrion	71.19	70.8
AT3G15090.1	Thale cress	mitochondrion	70.91	69.95
CDX82448	Canola	mitochondrion	67.04	69.14
Bra027280.1-P	Field mustard	mitochondrion	69.81	69.04
KRH22019	Soybean	mitochondrion	73.68	68.73
CDX75808	Canola	mitochondrion	66.48	68.57
Bra001583.1-P	Field mustard	mitochondrion	66.2	68.29
KXG33382	Sorghum	plastid	73.13	63.01
CDX98523	Canola	plastid	70.36	40.13
CDX97630	Canola	plastid	70.36	40.13
VIT_07s0151g00260.t01	Wine grape	cytosol	26.04	27.81
VIT_15s0048g01710.t01	Wine grape	cytosol, peroxisome, plastid	24.38	26.75
VIT_07s0151g00200.t01	Wine grape	cytosol, mitochondrion, plastid	17.73	25.81
VIT_01s0127g00740.t01	Wine grape	plastid	26.87	25.73
VIT_00s0301g00180.t01	Wine grape	cytosol	22.99	25.54
VIT_00s0301g00170.t01	Wine grape	cytosol	22.44	25.39
VIT_07s0151g00090.t01	Wine grape	mitochondrion	24.93	23.5
VIT_13s0067g00160.t01	Wine grape	peroxisome	21.88	22.9
VIT_09s0002g08480.t01	Wine grape	cytosol	19.67	21.45
VIT_09s0002g08470.t01	Wine grape	cytosol	19.11	20.72
VIT_09s0002g07690.t01	Wine grape	cytosol	10.25	20.44
VIT_09s0002g07820.t01	Wine grape	cytosol	6.09	19.13
VIT_14s0036g00560.t01	Wine grape	cytosol	8.31	18.87
VIT_09s0002g07840.t01	Wine grape	cytosol	14.96	18.69
VIT_09s0002g07620.t01	Wine grape	cytosol	14.13	17.29
VIT_09s0002g07580.t01	Wine grape	peroxisome	14.68	16.99
VIT_09s0070g00550.t01	Wine grape	cytosol	7.2	16.56
VIT_09s0002g07760.t01	Wine grape	cytosol	9.7	13.51

Protein Annotations

EntrezGene:100252024	wikigene:100252024	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_N
ProteinID:CCB46291	ProteinID:CCB46291.1	UniProt:F6H1Z5	EMBL:FN595229	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	EntrezGene:LOC100252024
wikigene:LOC100252024	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER	PANTHER:PTHR43482
PANTHER:PTHR43482:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGR:TC61256	UniParc:UPI00015C8019
ArrayExpress:VIT_19s0014g01890	EnsemblPlantsGene:VIT_19s0014g01890	EnsemblPlants:VIT_19s0014g01890.t01	unigene:Vvi.1740	RefSeq:XP_002285254	RefSeq:XP_002285254.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:2075755..2079468

Molecular Weight (calculated)

38830.9 Da

IEP (calculated)

8.356

GRAVY (calculated)

0.066

Length

361 amino acids

Sequence
(BLAST)

001: MRFSKLRTFQ IPGTASFRCR FIVTTCRAVV LPRFGGPHVL ELRPDAPVPD LKPTEVLVRT RAVSINPLDT RMRSGYGRSI FGPLLPLILG RDISGEVAAT
101: GASVRSLSVG QEVFGALHPT AVRGTYADYA ILSEDELTSK PVSISHVEAS AIPFAALTAW RALKSTARIA EGQRILIVGG GGAVGFAAIQ LCVATGCHVS
201: TTCGSQSLAW ILAAGAEQAV DYTSEDIESA LKGNFDAVLD TIGVPDTERV GINLLKRGGH YMTLQGEAAS LSDRYGLAVG LPAATAMLLK KQLQYRFSHG
301: IEYSWTYMRA DSEGLYEICK LSEAGKLKIP VEKTFPITQV REAHEAKDNR QIPGKVVLEL D

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.