Factsheet for GSMUA_Achr3P15520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P21600_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	GSMUA_Achr5P21600_001	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27200_001	Banana	mitochondrion	86.68	86.45
Os01t0753100-01	Rice	mitochondrion	74.46	75.07
Zm00001d043432_P001	Maize	mitochondrion	72.55	73.55
VIT_19s0014g01890.t01	Wine grape	mitochondrion	70.92	72.3
TraesCS3B01G326600.1	Wheat	mitochondrion	71.2	72.18
TraesCS3A01G292000.1	Wheat	mitochondrion	71.2	72.18
HORVU3Hr1G072320.2	Barley	mitochondrion	71.2	72.18
TraesCS3D01G291700.2	Wheat	mitochondrion	70.92	71.9
PGSC0003DMT400039777	Potato	mitochondrion	71.2	71.39
KRH27297	Soybean	mitochondrion	68.21	68.96
Solyc12g014050.1.1	Tomato	plastid	71.2	66.16
AT3G15090.1	Thale cress	mitochondrion	65.76	66.12
CDX82448	Canola	mitochondrion	62.23	65.43
Bra027280.1-P	Field mustard	mitochondrion	64.4	64.93
Bra001583.1-P	Field mustard	mitochondrion	61.68	64.86
CDX75808	Canola	mitochondrion	61.68	64.86
KXG33382	Sorghum	plastid	73.37	64.44
KRH22019	Soybean	mitochondrion	66.58	63.31
CDX98523	Canola	plastid	65.49	38.07
CDX97630	Canola	plastid	65.49	38.07
GSMUA_Achr4P07780_001	Banana	cytosol	25.82	30.74
GSMUA_Achr2P06100_001	Banana	mitochondrion	17.93	26.94
GSMUA_Achr4P15790_001	Banana	cytosol	23.64	26.77
GSMUA_Achr11P...	Banana	plasma membrane	23.91	26.67
GSMUA_Achr2P06110_001	Banana	mitochondrion	23.64	26.13
GSMUA_Achr6P27730_001	Banana	cytosol	17.39	25.3
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	18.21	25.28
GSMUA_AchrUn_...	Banana	plastid	21.74	22.99
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, vacuole	16.58	21.25

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G15520_001	EnsemblPlants:GSMUA_Achr3P15520_001
EnsemblPlants:GSMUA_Achr3T15520_001	InterPro:GroES-like_sf	UniProt:M0SEW8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602
InterPro:PKS_ER	PANTHER:PTHR43482	PANTHER:PTHR43482:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
UniParc:UPI0002967F71	SEG:seg	:	:	:	:

Description

Putative Reticulon-4-interacting protein 1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G15520_001]

Coordinates

chr3:-:16550623..16557237

Molecular Weight (calculated)

39437.0 Da

IEP (calculated)

9.057

GRAVY (calculated)

0.137

Length

368 amino acids

Sequence
(BLAST)

001: MWQLGGHRLL APAVGLRATS TAAVSSCRAV MLPRFGGPEV REVRPAVGVP SLKPRDVLVR SRAVSINPLD LRMRSGYGCS IFEPLLPLII GRDISGEVAA
101: VGTSVSSLTV GQEVFGALHP TAVRGTYADY AILSEDELTL KPPSATRENF VIVQDASAIP FAALTAWRAL KSTARITNGQ RLLVLGGGGA VGLAAIQIAV
201: AAGCSVSATC GSQSIERVLA FGAEQAIDYT AEDIEVAIKG QFDAVLDTIG VPETERTGIN LLKKGGHYMM LQAKTASLAD KYGLVIGIPA ATTILLKKQL
301: QYRYSHGIEY WWTYMRADAE GLDEFRRLSE AGKLKIPVEE TFPIAKVRKA HEVKEKRIIP GKVVLEVD

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.