CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85387
CDX86259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	CDX85387	AT5G49010.1	21798944
AT3G15090.1	CDX86259	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027280.1-P	Field mustard	mitochondrion	56.56	98.08
CDX98523	Canola	plastid	97.47	97.47
CDX82448	Canola	mitochondrion	50.24	90.86
CDX75808	Canola	mitochondrion	49.92	90.29
AT3G15090.1	Thale cress	mitochondrion	51.82	89.62
VIT_19s0014g01890.t01	Wine grape	mitochondrion	40.13	70.36
Os01t0753100-01	Rice	mitochondrion	40.44	70.14
PGSC0003DMT400039777	Potato	mitochondrion	40.13	69.21
Zm00001d043432_P001	Maize	mitochondrion	39.49	68.87
GSMUA_Achr8P27200_001	Banana	mitochondrion	39.65	68.02
TraesCS3D01G291700.2	Wheat	mitochondrion	38.7	67.49
KRH27297	Soybean	mitochondrion	38.7	67.31
TraesCS3B01G326600.1	Wheat	mitochondrion	38.55	67.22
HORVU3Hr1G072320.2	Barley	mitochondrion	38.39	66.94
TraesCS3A01G292000.1	Wheat	mitochondrion	38.07	66.39
GSMUA_Achr3P15520_001	Banana	mitochondrion	38.07	65.49
Solyc12g014050.1.1	Tomato	plastid	40.6	64.9
KXG33382	Sorghum	plastid	42.65	64.44
KRH22019	Soybean	mitochondrion	37.76	61.76
CDY34537	Canola	cytosol	15.32	29.48
CDX80695	Canola	cytosol	15.32	29.48
CDY61544	Canola	plastid	15.96	26.23
CDY47631	Canola	plastid	15.8	25.97
CDX79076	Canola	cytosol, peroxisome, plastid	8.06	25.37
CDX82839	Canola	cytosol	12.01	23.38
CDY16814	Canola	cytosol	3.32	23.33
CDX87218	Canola	cytosol	3.16	22.22
CDY32016	Canola	peroxisome	12.16	22.13
CDY68244	Canola	mitochondrion	6.0	20.88
CDX67648	Canola	extracellular	7.27	20.54
CDY72063	Canola	plastid	6.64	20.0

Protein Annotations

Gene3D:3.30.420.10	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	GO:A0A078E6A5	InterPro:ADH_N
EnsemblPlants:CDX97630	ProteinID:CDX97630	ProteinID:CDX97630.1	ncoils:Coil	InterPro:Exonuclease_RNaseT/DNA_pol3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016491	GO:GO:0016787
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00104856001	InterPro:GroES-like_sf	InterPro:IPR036397	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00929
PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER	PANTHER:PTHR43482	PANTHER:PTHR43482:SF1	InterPro:REX4_DEDDh_dom
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00479	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
SUPFAM:SSF53098	UniParc:UPI0004EE53E1	SEG:seg	:	:	:

Description

BnaA05g24490D

Coordinates

chrLK031900:+:709645..714259

Molecular Weight (calculated)

70127.7 Da

IEP (calculated)

9.988

GRAVY (calculated)

-0.364

Length

633 amino acids

Sequence
(BLAST)

001: MSSDLKRKPK KKTPKPVQTN PNWSLLQQKL KSDSNNSGNR KSSNNDDSDN PRSILGKRKE RPDSEVDAPK IYPLAPVNDD SSLTDEVAMD CEMVGVSQGT
101: KSALGRVTLV NKWGNVLYDE FVRPVERVVD FRTHISGIRP RDLRKAKDFR VAQTKVAELI KGKILVGHAL HNDLKVLLLT HPKKDIRDTA EYQPFLKDKT
201: RKSLKHLASE FLGADIQNGE HCPIDDARAA MLLYQKNRRE WERNVKDQTR MRLKQKKQEA DLRIDEGEMR VMRSYRGNSI AGLVSHPARL SPLRSIFTGC
301: RAVMLPRFGG PEVLELRENV PVPNLNPNEV LVRARAVSIN PLDCRIRAGY GRSVLQPHLP VVIGRDISGE VAAVGNSVKS FKVGQEVFGA LHPTALRGTY
401: TDYGILSEEE LIEKPSSVSH VEASAIPFAA LTAWRALKSN ARILEGQRLL VFGGGAVGFA AIQLGVAFGC HVTASCVGQT KDRILAAGAE QAVDYLTEDI
501: EVAVKGKFDA VLDTIGRPET ERIGINFLRK GGNYMTLQGE AASLTDRYGF VIGLPLATSL LAKKKIQYQY SHGIDYWWTY MRADPEGLAE IQRLVGAGKL
601: KIPVEKTFPI TEVVAAHEAK EKKLVPGKVV LEL

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.