CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16814	Canola	cytosol	97.78	97.78
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, vacuole	72.22	22.65
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	76.67	21.1
AT5G61510.1	Thale cress	plastid	92.22	20.44
VIT_09s0002g08480.t01	Wine grape	cytosol	74.44	20.24
VIT_09s0002g08470.t01	Wine grape	cytosol	73.33	19.82
KRH27530	Soybean	nucleus	81.11	19.41
Solyc06g034120.2.1	Tomato	extracellular	78.89	18.49
Os03t0101600-01	Rice	plasma membrane	68.89	17.97
Zm00001d027276_P001	Maize	extracellular	73.33	17.74
HORVU4Hr1G088610.1	Barley	plastid	72.22	17.24
KXG40429	Sorghum	plastid	73.33	17.19
TraesCS5A01G542400.1	Wheat	plastid	71.11	16.93
TraesCS4D01G365600.1	Wheat	plastid	71.11	16.75
TraesCS4B01G371900.1	Wheat	mitochondrion, plastid	71.11	16.54
CDX67648	Canola	extracellular	22.22	8.93
CDX82839	Canola	cytosol	23.33	6.46
CDY61544	Canola	plastid	24.44	5.71
CDY47631	Canola	plastid	24.44	5.71
CDX82448	Canola	mitochondrion	22.22	5.71
CDX75808	Canola	mitochondrion	22.22	5.71
CDY32016	Canola	peroxisome	21.11	5.46
CDY34537	Canola	cytosol	16.67	4.56
CDX80695	Canola	cytosol	16.67	4.56
CDX98523	Canola	plastid	22.22	3.16
CDX97630	Canola	plastid	22.22	3.16
CDY68244	Canola	mitochondrion	1.11	0.55
CDY72063	Canola	plastid	1.11	0.48
CDX79076	Canola	cytosol, peroxisome, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX87218	EnsemblPlantsGene:GSBRNA2T00146151001	Gene3D:3.40.50.720	Gene3D:3.90.180.10	GO:A0A078DIV8	PANTHER:PTHR42975
PFAM:PF13602	ProteinID:CDX87218	ProteinID:CDX87218.1	UniParc:UPI0004EE9C14	MapMan:35.2	:

Description

BnaC09g05330D

Coordinates

chrLK031849:-:1232996..1233511

Molecular Weight (calculated)

9701.6 Da

IEP (calculated)

5.634

GRAVY (calculated)

-0.076

Length

90 amino acids

Sequence
(BLAST)

1: MVSFGQSSGS PDPVPLSDLA PKSLFLTRPS MMQYNETRDE LLECAGEVFA NIASGVIKAR VNHKYPLSRV ADAHADVENR ITSGSVVLLP

Best Arabidopsis Sequence Match ( AT5G61510.1 )
(BLAST)

001: MAALTLHHHH HHRHHSCLQA SGHLSRRLYH RIFSSFPRNP VKDLNFRLSL ADFSSFSLST RGTVFAVRAL STVAVEESSE KKMVKGIRVY EHGGPEVLKW
101: EDVEVGEPKE GEIRVKNKAI GLNFIDVYFR KGVYKPASMP FTPGMEAVGE VVAVGSGLTG RMIGDLVAYA GNPMGAYAEE QILPADKVVP VPSSIDPIVA
201: ASIMLKGMTA QFLLRRCFKV EPGHTILVHA AAGGVGSLLC QWANALGATV IGTVSTNEKA AQAKEDGCHH VIMYKNEDFV SRVNDITSGK GVNVVYDSVG
301: KDTFKGSLAC LKSRGYMVSF GQSSGSPDPI PLSDLAPKSL FLTRPSMMHY NETRDELLEC AGEVFANVTS GILKARVNHK YPLSRVADAH ADLENRITSG
401: SVVLLP

Arabidopsis Description

At5g61510 [Source:UniProtKB/TrEMBL;Acc:A1L4Y4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.