CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
peroxisome 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44169
KRH47145

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	KRH44169	AT5G49010.1	21798944
AT3G15090.1	KRH47145	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22019	Soybean	mitochondrion	93.41	87.86
VIT_19s0014g01890.t01	Wine grape	mitochondrion	75.55	76.18
GSMUA_Achr8P27200_001	Banana	mitochondrion	71.7	70.73
PGSC0003DMT400039777	Potato	mitochondrion	71.15	70.57
Zm00001d043432_P001	Maize	mitochondrion	69.51	69.7
HORVU3Hr1G072320.2	Barley	mitochondrion	69.23	69.42
Os01t0753100-01	Rice	mitochondrion	69.51	69.32
TraesCS3D01G291700.2	Wheat	mitochondrion	68.96	69.15
TraesCS3B01G326600.1	Wheat	mitochondrion	68.41	68.59
TraesCS3A01G292000.1	Wheat	mitochondrion	68.13	68.32
GSMUA_Achr3P15520_001	Banana	mitochondrion	68.96	68.21
AT3G15090.1	Thale cress	mitochondrion	67.58	67.21
Bra027280.1-P	Field mustard	mitochondrion	66.48	66.3
CDX82448	Canola	mitochondrion	63.74	66.29
Bra001583.1-P	Field mustard	mitochondrion	63.74	66.29
CDX75808	Canola	mitochondrion	63.19	65.71
Solyc12g014050.1.1	Tomato	plastid	70.88	65.15
KXG33382	Sorghum	plastid	69.23	60.14
CDX98523	Canola	plastid	67.86	39.02
CDX97630	Canola	plastid	67.31	38.7
KRG93309	Soybean	cytosol	28.02	31.88
KRH07194	Soybean	nucleus	26.92	30.72
KRG93310	Soybean	cytosol	26.92	30.62
KRG93311	Soybean	cytosol	26.65	30.12
KRG93306	Soybean	cytosol	26.37	29.81
KRH23756	Soybean	endoplasmic reticulum	25.27	28.05
KRH46629	Soybean	cytosol	24.45	27.05
KRG99627	Soybean	cytosol	24.45	27.05
KRH36398	Soybean	cytosol	11.54	25.45
KRG99340	Soybean	plastid	27.47	25.32
KRH56616	Soybean	cytosol	7.42	25.23
KRH10765	Soybean	cytosol, peroxisome, plastid	22.53	25.23
KRH45668	Soybean	nucleus	27.47	25.19
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	23.9	25.07
KRH64241	Soybean	nucleus	23.63	24.86
KRH44933	Soybean	cytosol, peroxisome	19.78	24.16
KRH27530	Soybean	nucleus	22.8	22.07
KRG93308	Soybean	extracellular	10.44	21.47

Protein Annotations

EntrezGene:100799923	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02007798	InterPro:ADH_N
EnsemblPlantsGene:GLYMA_12G227400	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1LV40	EnsemblPlants:KRH27297	ProteinID:KRH27297	ProteinID:KRH27297.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER	PANTHER:PTHR43482	PANTHER:PTHR43482:SF1
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233CA45	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:38723331..38727920

Molecular Weight (calculated)

39239.6 Da

IEP (calculated)

8.663

GRAVY (calculated)

0.062

Length

364 amino acids

Sequence
(BLAST)

001: MRIPSNCEFT RITPSAFSYH RLKSYVSDCR AVLLPSFGGP HVLQLRSHVP VPPLKPHDVL VRARAVSVNP LDTRMRAGYG RSIFEPLLPL ILGRDVSGEV
101: SAVGDKVRSV SVGEQVFGAL HPTAVRGTYS DYAILSEEEV TPKPDSLTHV EASAIPFAAL TAWRALKSTA RISEGQRILV VGGGGAVGLS AVQLAVAAGC
201: SVATTCGSQS VDRLLAAGAD QAVDYVAEDV ELAIKGKFDA VLDTIGVPET ERMGINFLKR GGHYMTLQGE AASLSDRYGL TIGLPAATAV LLKKQLLYRF
301: SHGIEYSWTY MRADLDGLIE IRKLCEAGKM KIPVYKTFPI TQVKEAHEAK DKKLIPGKVV LELD

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.