Factsheet for Solyc12g014050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g065900.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	Solyc11g065900.1.1	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039777	Potato	mitochondrion	89.9	97.0
VIT_19s0014g01890.t01	Wine grape	mitochondrion	70.96	77.84
GSMUA_Achr8P27200_001	Banana	mitochondrion	68.43	73.44
Os01t0753100-01	Rice	mitochondrion	67.68	73.42
Zm00001d043432_P001	Maize	mitochondrion	65.66	71.63
GSMUA_Achr3P15520_001	Banana	mitochondrion	66.16	71.2
KRH27297	Soybean	mitochondrion	65.15	70.88
TraesCS3B01G326600.1	Wheat	mitochondrion	63.89	69.7
HORVU3Hr1G072320.2	Barley	mitochondrion	63.64	69.42
TraesCS3D01G291700.2	Wheat	mitochondrion	63.38	69.15
TraesCS3A01G292000.1	Wheat	mitochondrion	63.38	69.15
AT3G15090.1	Thale cress	mitochondrion	63.13	68.31
Bra027280.1-P	Field mustard	mitochondrion	62.88	68.22
CDX82448	Canola	mitochondrion	60.1	68.0
Bra001583.1-P	Field mustard	mitochondrion	59.85	67.71
CDX75808	Canola	mitochondrion	59.34	67.14
KRH22019	Soybean	mitochondrion	63.38	64.86
KXG33382	Sorghum	plastid	68.18	64.44
CDX98523	Canola	plastid	64.9	40.6
CDX97630	Canola	plastid	64.9	40.6
Solyc09g059030.2.1	Tomato	plastid	23.74	28.57
Solyc09g059040.2.1	Tomato	plastid	23.23	27.96
Solyc03g095320.1.1	Tomato	cytosol, plastid	6.06	27.27
Solyc09g059020.2.1	Tomato	cytosol, extracellular, peroxisome	18.43	26.64
Solyc05g005480.2.1	Tomato	plastid	25.25	25.77
Solyc03g095360.2.1	Tomato	plastid	20.2	22.99
Solyc02g078940.2.1	Tomato	extracellular	18.69	22.77
Solyc06g034120.2.1	Tomato	extracellular	20.96	21.61

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4DCU0
InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER	PANTHER:PTHR43482	PANTHER:PTHR43482:SF1
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc12g014050.1	EnsemblPlants:Solyc12g014050.1.1	UniParc:UPI000276A647

Description

No Description!

Coordinates

chr12:-:4860592..4867016

Molecular Weight (calculated)

42883.9 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.003

Length

396 amino acids

Sequence
(BLAST)

001: MYTLSLNHST ICIHFPQITE FAAQFLCKTM IRLRYRRIEI GTGDGGISNL GFGKRGIVTS CRAVLLPRFG GPEMLEFRDN VSVPDLKPNQ VLVRARAVSI
101: NPLDTRMRSG YGRSIFEPLL PLILGRDISG EVAAVGNSVK SLTVGQDVFG ALHPTAVRGT YTDYAILAED ELAPKPGSLS HVEASAIPFA ALTAWRALKS
201: TARIREGHRV LVIGGGGAVG FSAIQLAVAA GCHVSTTCGG ESISRILAAG AEQAIDYTSE DAEVALKGHF DAVLDTIGVP DTERMGISLL KKGGHYMTLQ
301: GEAASVTDRH GLAIGLPMAA AILLKKQIQY RYSHGIEYWW NYMRADAEGL HEIRRLSEAG KLQLPVDKTF PISQVREAHE AKDRRQIPGK VVLEID

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.