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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • peroxisome 3
  • cytosol 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, peroxisome, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:peroxisome
Plant-mPloc:cytosol
Predotar:plastid
PProwler:peroxisome
PTS1:peroxisome
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G56460.1 Solyc04g008430.1.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g095320.1.1 Tomato cytosol, plastid 23.28 92.05
VIT_13s0067g00160.t01 Wine grape peroxisome 75.86 76.52
CDX67648 Canola extracellular 49.14 76.34
GSMUA_AchrUn_... Banana plastid 75.57 75.57
KRH64241 Soybean nucleus 74.71 75.14
AT3G56460.1 Thale cress cytosol 75.0 75.0
KRH53690 Soybean cytosol, peroxisome, plasma membrane 74.71 74.93
CDY32016 Canola peroxisome 74.43 74.43
HORVU6Hr1G063770.1 Barley peroxisome 73.28 73.7
EES12890 Sorghum plastid 72.13 72.54
TraesCS6B01G277800.1 Wheat peroxisome 71.84 72.25
Zm00001d002246_P001 Maize cytosol, endoplasmic reticulum, peroxisome 72.41 72.0
TraesCS6A01G246800.1 Wheat peroxisome 71.55 71.97
TraesCS6D01G229000.1 Wheat peroxisome 71.26 71.68
Os05t0313500-01 Rice peroxisome, plastid 67.53 70.15
Bra003241.1-P Field mustard cytosol 73.56 54.82
Solyc02g078940.2.1 Tomato extracellular 23.56 25.23
Solyc09g059040.2.1 Tomato plastid 23.85 25.23
Solyc09g059020.2.1 Tomato cytosol, extracellular, peroxisome 19.54 24.82
Solyc09g059030.2.1 Tomato plastid 22.99 24.32
Solyc05g005480.2.1 Tomato plastid 27.01 24.23
Solyc06g034120.2.1 Tomato extracellular 24.71 22.4
Solyc12g014050.1.1 Tomato plastid 22.99 20.2
Protein Annotations
Gene3D:3.40.50.720Gene3D:3.90.180.10MapMan:50.1.3InterPro:ADH_CInterPro:ADH_NGO:GO:0003674
GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:GroES-like_sf
UniProt:K4BIW0InterPro:NAD(P)-bd_dom_sfPFAM:PF00107PFAM:PF08240InterPro:PKS_ERPANTHER:PTHR43677
PANTHER:PTHR43677:SF4SMART:SM00829SUPFAM:SSF50129SUPFAM:SSF51735EnsemblPlantsGene:Solyc03g095360.2EnsemblPlants:Solyc03g095360.2.1
UniParc:UPI000276783ESEG:seg::::
Description
No Description!
Coordinates
chr3:+:56412064..56426023
Molecular Weight (calculated)
36993.3 Da
IEP (calculated)
9.842
GRAVY (calculated)
0.270
Length
348 amino acids
Sequence
(BLAST)
001: MEALLVRKLG DPTLPPNASE KSSLDLSTSH PIPNLESPTS VRVRIKATSL NFANYLQVLG KYQEKPPLPF IPGSDYSGVV EAVGPNVTKF KIGDLVCSFV
101: ALGSFAQFIV ADESDLFQVP DGCDLVAAGA LPVAYGTSHV ALVHRAQLRP KQVLLVLGAA GGVGLSAVQI GKVCGATVIA VARGNEKVQF LKSLGVDHAV
201: DLSSANVIES VKGFLKSRKL KGVDVLYDPV GGKLTKDSLK LLNWGAQILV IGFASGEVPV VPANIALVKN WTIHGLYWGS YKIHQPNVLG DSLKELLAWL
301: SKGLITVNIS HTFSLTEAHL AFTALKDRRA IGKVMITFDG GKIVKSKL
Best Arabidopsis Sequence Match ( AT3G56460.1 )
(BLAST)
001: MEALVCRKLG DPTATNPGSP ESPVEVSKTH PIPSLNSDTS VRVRVIATSL NYANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: DLGSFAQFIV ADQSRLFLVP ERCDMVAAAA LPVAFGTSHV ALVHRARLTS GQVLLVLGAA GGVGLAAVQI GKVCGAIVIA VARGTEKIQL LKSMGVDHVV
201: DLGTENVISS VKEFIKTRKL KGVDVLYDPV GGKLTKESMK VLKWGAQILV IGFASGEIPV IPANIALVKN WTVHGLYWGS YRIHQPNVLE DSIKELLSWL
301: SRGLITIHIS HTYSLSQANL AFGDLKDRKA IGKVMIALDH KTALSSKL
Arabidopsis Description
GroES-like zinc-binding alcohol dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.