Factsheet for Bra003241.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56460.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G56460.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67648	Canola	extracellular	44.97	93.75
AT3G56460.1	Thale cress	cytosol	65.95	88.51
KRH64241	Soybean	nucleus	56.1	75.72
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	55.89	75.22
VIT_13s0067g00160.t01	Wine grape	peroxisome	54.6	73.91
GSMUA_AchrUn_...	Banana	plastid	55.03	73.85
Solyc03g095360.2.1	Tomato	plastid	54.82	73.56
EES12890	Sorghum	plastid	50.96	68.79
Zm00001d002246_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	51.18	68.29
HORVU6Hr1G063770.1	Barley	peroxisome	50.54	68.21
TraesCS6B01G277800.1	Wheat	peroxisome	49.68	67.05
Solyc03g095320.1.1	Tomato	cytosol, plastid	12.63	67.05
Os05t0313500-01	Rice	peroxisome, plastid	47.75	66.57
TraesCS6A01G246800.1	Wheat	peroxisome	49.25	66.47
TraesCS6D01G229000.1	Wheat	peroxisome	49.04	66.19
Bra035926.1-P	Field mustard	cytosol	17.99	25.93
Bra001207.1-P	Field mustard	cytosol	17.99	25.53
Bra013540.1-P	Field mustard	cytosol	17.56	25.23
Bra001583.1-P	Field mustard	mitochondrion	15.85	21.14
Bra027280.1-P	Field mustard	mitochondrion	16.27	20.82
Bra024616.1-P	Field mustard	plastid	17.13	20.78

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N
EnsemblPlantsGene:Bra003241	EnsemblPlants:Bra003241.1	EnsemblPlants:Bra003241.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:GroES-like_sf
InterPro:IPR013766	UniProt:M4CGA8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00085	PFAM:PF00107	PFAM:PF08240
InterPro:PKS_ER	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR43677	PANTHER:PTHR43677:SF4	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI000254152C	SEG:seg	:	:	:	:

Description

AT3G56460 (E=7e-163) | oxidoreductase, zinc-binding dehydrogenase family protein

Coordinates

chrA07:-:12109530..12112450

Molecular Weight (calculated)

50465.5 Da

IEP (calculated)

8.311

GRAVY (calculated)

0.138

Length

467 amino acids

Sequence
(BLAST)

001: MEALVCRKLG DPTATETGSP ESPVEVSKNH PIPPLTSDTA VRVKVTATSL NFANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: ALGSYAQFIV ADQSLLFLVP EGCDMIAAAA LPVAFGTSHV ALVHRARLTS GQVLMVLGAA GGVGLAAVQI GKICGAVVIA VARGSEKIQL LKSMGVDHVV
201: DLGSENVITS VKEFVKTRKL KGVDVLYDPV GGKLTKDSMK VLNWGAQILV IGFASGEVPL IPANIALVKN WTVHGLYWGS YKIHQPNVLD DSIRELLSWL
301: SRGLITMHIS HTYSLSQANL AFGAIKDRKL WSCICCSSNK DEAQARSQHG PKGKVHPVTK IEKWEEKITE ANNNGMILVV YFSAPWCVPC KKIEPVFKKL
401: ASIYPSMIFV TIDVEELAEF SDEWNVEATP TIVFLKDGRQ MDKLVGAETS ELQKKTAAAA DLLLKKP

Best Arabidopsis Sequence Match ( AT3G56460.1 )
(BLAST)

001: MEALVCRKLG DPTATNPGSP ESPVEVSKTH PIPSLNSDTS VRVRVIATSL NYANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: DLGSFAQFIV ADQSRLFLVP ERCDMVAAAA LPVAFGTSHV ALVHRARLTS GQVLLVLGAA GGVGLAAVQI GKVCGAIVIA VARGTEKIQL LKSMGVDHVV
201: DLGTENVISS VKEFIKTRKL KGVDVLYDPV GGKLTKESMK VLKWGAQILV IGFASGEIPV IPANIALVKN WTVHGLYWGS YRIHQPNVLE DSIKELLSWL
301: SRGLITIHIS HTYSLSQANL AFGDLKDRKA IGKVMIALDH KTALSSKL

Arabidopsis Description

GroES-like zinc-binding alcohol dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.