Factsheet for PGSC0003DMT400011576

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007475
PGSC0003DMT400011724
PGSC0003DMT400016336
PGSC0003DMT400019062
PGSC0003DMT400020443
PGSC0003DMT400029044
PGSC0003DMT400039777
PGSC0003DMT400052958
PGSC0003DMT400052998
PGSC0003DMT400069822
PGSC0003DMT400073132
PGSC0003DMT400078266
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	14730064
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	16814720
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	17898163
AT5G47100.1	PGSC0003DMT400011724	AT1G48260.1	14730064
AT5G47100.1	PGSC0003DMT400069822	AT1G48260.1	14730064
AT5G47100.1	PGSC0003DMT400019062	AT2G25090.1	14730064
AT5G47100.1	PGSC0003DMT400019062	AT2G25090.1	17898163
AT5G47100.1	PGSC0003DMT400052998	AT2G30360.1	14730064
AT5G47100.1	PGSC0003DMT400078266	AT2G30360.1	14730064
AT5G47100.1	PGSC0003DMT400052998	AT2G30360.1	21798944
AT5G47100.1	PGSC0003DMT400078266	AT2G30360.1	21798944
AT5G47100.1	PGSC0003DMT400039777	AT3G15090.1	21798944
AT5G47100.1	PGSC0003DMT400011724	AT3G17510.1	14730064
AT5G47100.1	PGSC0003DMT400069822	AT3G17510.1	14730064
AT5G47100.1	PGSC0003DMT400011724	AT3G17510.1	17092313
AT5G47100.1	PGSC0003DMT400069822	AT3G17510.1	17092313
AT5G47100.1	PGSC0003DMT400073132	AT4G18700.1	14730064
AT5G47100.1	PGSC0003DMT400016336	AT4G24400.1	14730064
AT5G47100.1	PGSC0003DMT400020443	AT4G30960.1	17898163
AT5G47100.1	PGSC0003DMT400029044	AT4G30960.1	17898163
AT5G47100.1	PGSC0003DMT400019062	AT5G10930.1	14730064
AT5G47100.1	PGSC0003DMT400007475	AT5G35410.1	14730064
AT5G47100.1	PGSC0003DMT400052958	AT5G58380.1	14730064

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077770.2.1	Tomato	cytosol	99.53	99.53
VIT_02s0236g00140.t01	Wine grape	cytosol	88.26	88.26
PGSC0003DMT400068352	Potato	cytosol	84.98	84.19
Bra012655.1-P	Field mustard	cytosol	83.57	83.57
CDX90465	Canola	cytosol	83.57	83.57
VIT_02s0236g00150.t01	Wine grape	cytosol	86.85	82.96
Bra040169.1-P	Field mustard	cytosol	82.63	82.63
CDY38412	Canola	cytosol	82.63	82.63
GSMUA_AchrUn_...	Banana	cytosol	82.63	82.63
CDX78784	Canola	cytosol	82.16	82.16
CDY09616	Canola	cytosol	82.16	82.16
GSMUA_Achr4P30070_001	Banana	cytosol	80.75	80.75
AT5G47100.1	Thale cress	cytosol	80.28	80.28
Zm00001d029976_P004	Maize	cytosol, mitochondrion	79.81	79.81
CDY28977	Canola	cytosol	79.81	79.81
Bra022104.1-P	Field mustard	cytosol	79.81	79.81
CDY40580	Canola	cytosol	79.34	79.34
EER94470	Sorghum	cytosol	79.34	79.34
CDY25987	Canola	cytosol	78.87	78.87
Bra017504.1-P	Field mustard	cytosol	78.87	78.87
CDY69850	Canola	cytosol	78.87	78.87
GSMUA_Achr4P26350_001	Banana	cytosol	78.87	78.87
HORVU1Hr1G055300.1	Barley	cytosol	78.4	77.67
TraesCSU01G178500.1	Wheat	cytosol	78.4	77.67
TraesCS1B01G229300.1	Wheat	cytosol	78.4	77.67
TraesCS1A01G215800.1	Wheat	cytosol	78.4	77.67
Os10t0564800-01	Rice	plasma membrane	77.46	77.46
KRH57533	Soybean	mitochondrion	75.59	75.59
KRH28207	Soybean	cytosol	73.71	74.06
TraesCSU01G129500.1	Wheat	cytosol, mitochondrion	74.18	73.15
TraesCS5A01G545500.2	Wheat	cytosol	73.24	72.56
TraesCS4B01G379200.1	Wheat	cytosol	68.54	71.92
HORVU4Hr1G090270.10	Barley	cytosol	73.24	71.89
KRH04244	Soybean	cytosol	69.48	67.58
AT4G17615.3	Thale cress	cytosol	76.53	64.68
Zm00001d000046_P001	Maize	cytosol	52.11	63.07
PGSC0003DMT400052805	Potato	cytosol	75.59	61.69
PGSC0003DMT400050430	Potato	cytosol	61.97	61.68
PGSC0003DMT400023568	Potato	cytosol	61.5	61.22
PGSC0003DMT400057342	Potato	cytosol, extracellular	62.91	61.19
PGSC0003DMT400037245	Potato	cytosol	62.44	59.91
PGSC0003DMT400076653	Potato	cytosol	62.44	59.38
PGSC0003DMT400014960	Potato	cytosol	30.52	54.62
PGSC0003DMT400046089	Potato	cytosol	48.36	52.82
PGSC0003DMT400088667	Potato	cytosol	54.93	52.23
PGSC0003DMT400014962	Potato	cytosol	19.72	42.86
PGSC0003DMT400076980	Potato	mitochondrion	53.52	39.31

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	ProteinID:ABB02619	ProteinID:ABB02619.1	ProteinID:ABB02643	ProteinID:ABB02643.1
EMBL:DQ222487	EMBL:DQ222512	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M0ZZS3	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400004554
PGSC:PGSC0003DMG400004554	EnsemblPlants:PGSC0003DMT400011576	PRINTS:PR00450	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23056
PANTHER:PTHR23056:SF41	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002960C86	:	:

Description

Calcineurin B 01 [Source:PGSC_GENE;Acc:PGSC0003DMG400004554]

Coordinates

chr8:-:50839625..50846366

Molecular Weight (calculated)

24324.0 Da

IEP (calculated)

4.620

GRAVY (calculated)

-0.196

Length

213 amino acids

Sequence
(BLAST)

001: MGCFNSKVKK QFRGHEDPIA LASQTAFSVS EVEALFELFK SISSSVIDDG LISKEEFQLA LFKNRKKENL FANRIFDLFD VKQKGVIDFG DFVKGLHVFH
101: PNAPQEEKVN FSFKLYDLDG TGFIERQEVK QMLIALLCES EMKLADETIE SILDKTFVEA DSNQDGKIDK SEWQIFVNQN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE VAT

Best Arabidopsis Sequence Match ( AT4G17615.4 )
(BLAST)

001: MGCFHSKAAK EFRGHEDPVK LASETAFSVS EVEALFELFK SISSSVVDDG LINKEEFQLA LFKSRKRENI FANRIFDMFD VKRKGVIDFG DFVRSLNVFH
101: PNASLEDKID FTFRLYDMDC TGYIERQEVK QMLIALLCES EMKLADETIE IILDKTFEDA DVNQDGKIDK LEWSDFVNKN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE IAT

Arabidopsis Description

CBL1calcineurin B-like protein 1 [Source:TAIR;Acc:AT4G17615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.