Factsheet for PGSC0003DMT400076980

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 3
plasma membrane 3
extracellular 3
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007475
PGSC0003DMT400019238
PGSC0003DMT400050774
PGSC0003DMT400055259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33000.1	PGSC0003DMT400019238	AT3G54840.1	17825054
AT4G33000.1	PGSC0003DMT400050774	AT4G19640.1	17825054
AT4G33000.1	PGSC0003DMT400055259	AT4G19640.1	17825054
AT4G33000.1	PGSC0003DMT400007475	AT5G35410.1	17449811
AT4G33000.1	PGSC0003DMT400007475	AT5G35410.1	17825054
AT4G33000.1	PGSC0003DMT400007475	AT5G35410.1	19448033

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065330.2.1	Tomato	endoplasmic reticulum, extracellular	77.59	87.55
CDY04300	Canola	cytosol	34.48	76.34
Bra011404.1-P	Field mustard	cytosol, plastid	51.72	71.09
CDX75314	Canola	cytosol, endoplasmic reticulum	58.62	68.27
CDX68929	Canola	cytosol, endoplasmic reticulum, mitochondrion	58.28	67.87
VIT_04s0008g00950.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	59.66	67.05
CDY13513	Canola	endoplasmic reticulum, nucleus, plasma membrane	49.66	66.36
CDY45024	Canola	cytosol	55.52	65.45
CDY28278	Canola	cytosol	55.52	65.45
Bra034543.1-P	Field mustard	cytosol	55.52	65.45
AT4G33000.1	Thale cress	golgi, plastid	56.21	63.67
CDX72384	Canola	cytosol	56.9	61.8
VIT_04s0008g00960.t01	Wine grape	plastid	52.76	60.96
Bra037030.1-P	Field mustard	cytosol	54.14	60.85
GSMUA_Achr3P32370_001	Banana	cytosol	53.45	58.71
KRH05482	Soybean	cytosol, plasma membrane, plastid	51.72	58.14
Os01t0711500-00	Rice	plastid	52.76	57.52
PGSC0003DMT400050430	Potato	cytosol	42.07	57.01
PGSC0003DMT400023568	Potato	cytosol	42.07	57.01
PGSC0003DMT400014960	Potato	cytosol	23.1	56.3
PGSC0003DMT400057342	Potato	cytosol, extracellular	42.41	56.16
KRH44162	Soybean	cytosol, extracellular	51.03	55.85
PGSC0003DMT400046089	Potato	cytosol	37.24	55.38
TraesCS3D01G211300.1	Wheat	cytosol	54.83	55.21
TraesCS3A01G053300.1	Wheat	golgi	55.52	55.14
KRH47134	Soybean	cytosol	50.0	55.13
TraesCS3B01G235500.1	Wheat	cytosol	54.14	54.51
PGSC0003DMT400037245	Potato	cytosol	41.72	54.5
PGSC0003DMT400068352	Potato	cytosol	40.34	54.42
PGSC0003DMT400076653	Potato	cytosol	41.72	54.02
PGSC0003DMT400011576	Potato	cytosol	39.31	53.52
TraesCS3B01G064500.2	Wheat	cytosol, golgi, mitochondrion	54.48	53.38
KXG33232	Sorghum	endoplasmic reticulum	51.72	53.0
KXG32770	Sorghum	cytosol, plastid	56.21	51.1
PGSC0003DMT400088667	Potato	cytosol	37.59	48.66
PGSC0003DMT400014962	Potato	cytosol	16.21	47.96
Zm00001d044285_P003	Maize	plastid	56.21	45.15
TraesCS3A01G208300.2	Wheat	cytosol, mitochondrion	54.83	43.8
Os01t0579600-01	Rice	cytosol	32.76	43.58
PGSC0003DMT400052805	Potato	cytosol	37.24	41.38

Protein Annotations

EntrezGene:102595606	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628
GO:GO:0009705	GO:GO:0016020	GO:GO:0042538	GO:GO:0043266	GO:GO:0050801	GO:GO:2000021
InterPro:IPR002048	UniProt:M1CXQ4	PFAM:PF13499	PFAM:PF13833	EnsemblPlantsGene:PGSC0003DMG400029942	PGSC:PGSC0003DMG400029942
EnsemblPlants:PGSC0003DMT400076980	PRINTS:PR00450	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF26
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00029675DF	SEG:seg	:	:

Description

Calcineurin B 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400029942]

Coordinates

chr8:+:36125583..36131607

Molecular Weight (calculated)

32747.0 Da

IEP (calculated)

4.408

GRAVY (calculated)

0.003

Length

290 amino acids

Sequence
(BLAST)

001: MDSTRSSLSW SSLTISEKIC ASFFPIIALI EACIYAVSGC FECHYPPKNK FNYDYADLAR LAGESRFNVN EVEALYELFK KLSCSIIDDG LIHKSPGLAF
101: SQINCASETL LSFVGSALSV GSKGAPSKAC VSGFNFDEEL QLALFQTPYG ENLFLDRVFY LFDEKQNGVI EFEEFIHALN IFHPYAPIDD KIDFAFRLYD
201: LRQTGFIERE EVKQMVIAIL MESEMRLSDE LVEEIIDKTF ADADADGDGK IDKKDWKEFV IRYPSLLKNM TLPYLKLSGT RSLAAAFFDA

Best Arabidopsis Sequence Match ( AT4G33000.1 )
(BLAST)

001: MTTGRPNNIL ALKISTRSSS LTVGEQFCAV FIPFFAIIDV LVSSVGQCFD CRSTSPRTCQ HADLERLARE SQFSVNEVEA LYELFKKLSC SIIDDGLIHK
101: EELRLALFQA PYGENLFLDR VFDLFDEKKN GVIEFEEFIH ALSVFHPYAS IQEKTDFAFR LYDLRQTGFI EREEVQQMVS AILLESDMML SDELLTMIID
201: KTFADADSDK DGKISKDEWN VYVHKHPSLL KNMTLPYLKD VTTAFPSFIF NTEVED

Arabidopsis Description

CBL10Calcineurin B-like 10 [Source:UniProtKB/TrEMBL;Acc:M5BEI3]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.