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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78272
CDX78945
CDX78949
CDX99356
CDY02896
CDY09323
CDY36813
CDY44603
CDY55834
CDY61658

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33000.1 CDX78272 AT3G54840.1 17825054
AT4G33000.1 CDY02896 AT3G54840.1 17825054
AT4G33000.1 CDY55834 AT3G54840.1 17825054
AT4G33000.1 CDY61658 AT3G54840.1 17825054
AT4G33000.1 CDX78945 AT4G19640.1 17825054
AT4G33000.1 CDX78949 AT4G19640.1 17825054
AT4G33000.1 CDX99356 AT4G19640.1 17825054
AT4G33000.1 CDY09323 AT4G19640.1 17825054
AT4G33000.1 CDY36813 AT5G35410.1 17449811
AT4G33000.1 CDY44603 AT5G35410.1 17449811
AT4G33000.1 CDY36813 AT5G35410.1 17825054
AT4G33000.1 CDY44603 AT5G35410.1 17825054
AT4G33000.1 CDY36813 AT5G35410.1 19448033
AT4G33000.1 CDY44603 AT5G35410.1 19448033
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68929 Canola cytosol, endoplasmic reticulum, mitochondrion 99.2 99.2
Bra011404.1-P Field mustard cytosol, plastid 76.71 90.52
CDY45024 Canola cytosol 87.15 88.21
CDY28278 Canola cytosol 87.15 88.21
CDY13513 Canola endoplasmic reticulum, nucleus, plasma membrane 76.71 88.02
CDY04300 Canola cytosol 45.38 86.26
CDX72384 Canola cytosol 90.36 84.27
AT4G33000.1 Thale cress golgi, plastid 85.14 82.81
Solyc08g065330.2.1 Tomato endoplasmic reticulum, extracellular 71.89 69.65
VIT_04s0008g00950.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plastid 70.28 67.83
VIT_04s0008g00960.t01 Wine grape plastid 65.86 65.34
KRH44162 Soybean cytosol, extracellular 67.47 63.4
Os01t0711500-00 Rice plastid 67.47 63.16
KRH47134 Soybean cytosol 66.27 62.74
GSMUA_Achr3P32370_001 Banana cytosol 66.27 62.5
CDY67196 Canola cytosol 16.87 60.0
TraesCS3A01G053300.1 Wheat golgi 70.28 59.93
TraesCS3D01G211300.1 Wheat cytosol 68.27 59.03
PGSC0003DMT400076980 Potato mitochondrion 68.27 58.62
TraesCS3B01G235500.1 Wheat cytosol 67.47 58.33
CDY62266 Canola cytosol 11.24 58.33
TraesCS3B01G064500.2 Wheat cytosol, golgi, mitochondrion 69.08 58.11
CDX89324 Canola cytosol 52.61 57.96
CDX94315 Canola cytosol 52.61 57.96
CDY42728 Canola cytosol 52.21 57.52
CDX92814 Canola cytosol 52.21 57.52
KRH05482 Soybean cytosol, plasma membrane, plastid 59.44 57.36
KXG33232 Sorghum endoplasmic reticulum 64.66 56.89
CDY09616 Canola cytosol 48.59 56.81
CDX90465 Canola cytosol 48.19 56.34
CDY06547 Canola cytosol 51.0 56.19
CDY64981 Canola cytosol 51.0 56.19
CDY19840 Canola cytosol 49.0 55.96
CDY38412 Canola cytosol 47.79 55.87
CDY69850 Canola cytosol 47.79 55.87
CDY25987 Canola cytosol 47.79 55.87
CDX80425 Canola cytosol 49.4 55.66
CDY28977 Canola cytosol 47.39 55.4
CDX78784 Canola cytosol 47.39 55.4
CDY40580 Canola cytosol 47.39 55.4
KXG32770 Sorghum cytosol, plastid 69.88 54.55
CDX87133 Canola cytosol 46.99 54.17
CDY64882 Canola mitochondrion 45.78 53.27
CDY46533 Canola mitochondrion 45.78 53.27
CDY11963 Canola cytosol 50.6 52.94
CDY36774 Canola cytosol 50.6 52.94
CDY44281 Canola cytosol 46.99 52.94
CDY59968 Canola cytosol, plasma membrane 46.18 52.04
CDY32236 Canola cytosol, extracellular 44.98 49.34
CDY34452 Canola cytosol, extracellular 44.18 48.46
Zm00001d044285_P003 Maize plastid 69.08 47.65
TraesCS3A01G208300.2 Wheat cytosol, mitochondrion 68.27 46.83
Os01t0579600-01 Rice cytosol 39.36 44.95
CDY56859 Canola cytosol 34.94 42.44
CDX92464 Canola cytosol 34.54 41.95
CDX89325 Canola plastid 43.78 39.64
CDX94316 Canola plastid 40.96 36.96
Protein Annotations
Gene3D:1.10.238.10MapMan:26.6.1.1.3GO:A0A078CGQ7EnsemblPlants:CDX75314ProteinID:CDX75314ProteinID:CDX75314.1
InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domGO:GO:0003674GO:GO:0005488GO:GO:0005509
GO:GO:0005575GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00121190001InterPro:IPR002048PFAM:PF13499
PFAM:PF13833PRINTS:PR00450ScanProsite:PS00018PFscan:PS50222PANTHER:PTHR23056PANTHER:PTHR23056:SF26
SMART:SM00054SUPFAM:SSF47473TMHMM:TMhelixUniParc:UPI0001B63DE8SEG:seg:
Description
BnaA01g03880D
Coordinates
chrLK031804:+:621251..623160
Molecular Weight (calculated)
28746.6 Da
IEP (calculated)
4.712
GRAVY (calculated)
-0.024
Length
249 amino acids
Sequence
(BLAST)
001: MDWPKVSSRS SSLTVGEKVC AVFIPLFAII DFLFSTVGQC FDCRRRRSPQ VCHHVDLARL AHGSPFSVNE VEALYELFKK LSCSIIDDGL IHKEELRLAL
101: FQAPYGENLF LDRVFDLFDE KKNGVIEFEE FIHALSVFHP YAPIEEKIDF AFRLYDLRQT GYIEREEVHQ MVAAILMESE MILSDELLTM IIDKTFADAD
201: ADKDGKISKE EWKVYVLKHP TLLKNMTLPY LKDVTTAFPS FIFNTEVED
Best Arabidopsis Sequence Match ( AT4G33000.2 )
(BLAST)
001: MEQVSSRSSS LTVGEQFCAV FIPFFAIIDV LVSSVGQCFD CRSTSPRTCQ HADLERLARE SQFSVNEVEA LYELFKKLSC SIIDDGLIHK EELRLALFQA
101: PYGENLFLDR VFDLFDEKKN GVIEFEEFIH ALSVFHPYAS IQEKTDFAFR LYDLRQTGFI EREEVQQMVS AILLESDMML SDELLTMIID KTFADADSDK
201: DGKISKDEWN VYVHKHPSLL KNMTLPYLKD VTTAFPSFIF NTEVED
Arabidopsis Description
CBL10Calcineurin B-like 10 [Source:UniProtKB/TrEMBL;Acc:M5BEI3]
SUBAcon: [endoplasmic reticulum,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.