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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • plastid 3
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68299
CDX68929
CDX71438
CDX72384
CDX72833
CDX75314
CDX83275
CDX96350
CDY04300
CDY04504
CDY13513
CDY28278
CDY31186
CDY36679
CDY45024

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54840.1 CDX68299 AT1G71830.1 16621602
AT3G54840.1 CDX72833 AT1G71830.1 16621602
AT3G54840.1 CDX96350 AT1G71830.1 16621602
AT3G54840.1 CDY36679 AT1G71830.1 16621602
AT3G54840.1 CDX71438 AT2G27600.1 17468262
AT3G54840.1 CDX83275 AT2G27600.1 17468262
AT3G54840.1 CDY04504 AT2G27600.1 17468262
AT3G54840.1 CDY31186 AT2G27600.1 17468262
AT3G54840.1 CDX68929 AT4G33000.1 17825054
AT3G54840.1 CDX72384 AT4G33000.1 17825054
AT3G54840.1 CDX75314 AT4G33000.1 17825054
AT3G54840.1 CDY04300 AT4G33000.1 17825054
AT3G54840.1 CDY13513 AT4G33000.1 17825054
AT3G54840.1 CDY28278 AT4G33000.1 17825054
AT3G54840.1 CDY45024 AT4G33000.1 17825054
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014785.1-P Field mustard cytosol, plastid 62.08 83.92
CDY61658 Canola cytosol 61.71 82.18
AT3G54840.1 Thale cress cytosol 60.59 80.69
CDY55834 Canola cytosol, plastid 59.11 78.33
CDX78272 Canola cytosol 58.74 77.83
VIT_13s0019g04680.t01 Wine grape cytosol 56.51 76.0
KRG91957 Soybean cytosol 54.65 73.5
PGSC0003DMT400019238 Potato cytosol 53.9 72.5
Solyc11g008430.1.1 Tomato cytosol 53.9 72.5
GSMUA_Achr1P03160_001 Banana cytosol 46.84 71.59
TraesCS4D01G267900.1 Wheat cytosol 43.12 69.46
KRH34819 Soybean cytosol 52.42 68.78
TraesCS1A01G140700.1 Wheat cytosol 39.03 68.63
Os03t0151900-01 Rice plasma membrane 49.44 66.83
OQU93218 Sorghum plastid 49.44 66.5
GSMUA_Achr5P10670_001 Banana cytosol 46.47 64.77
TraesCS1B01G157100.1 Wheat cytosol, plastid 47.96 64.5
TraesCS1D01G139500.1 Wheat cytosol, plastid 47.96 64.5
TraesCS4A01G035800.1 Wheat plastid 47.58 64.32
TraesCS4B01G268600.1 Wheat plastid 47.58 64.32
Zm00001d048410_P004 Maize plastid 47.96 60.85
GSMUA_Achr4P29310_001 Banana plastid 49.44 60.73
Os10t0441800-01 Rice plasma membrane 50.93 54.8
HORVU4Hr1G072020.1 Barley cytosol 47.58 49.23
CDY39412 Canola cytosol 30.86 41.5
CDY23153 Canola cytosol 30.86 41.5
CDX82579 Canola cytosol 30.86 41.5
CDY13065 Canola cytosol 30.86 41.5
CDX99356 Canola cytosol 30.11 40.3
CDX78949 Canola cytosol 29.37 39.3
CDX78373 Canola cytosol 24.91 32.37
CDX81166 Canola cytosol 24.91 32.37
CDY13772 Canola cytosol 24.54 31.88
CDY30479 Canola cytosol 24.54 31.73
CDX74672 Canola cytosol 24.54 31.73
CDX83425 Canola cytosol 24.54 31.73
CDX95606 Canola cytosol 24.54 31.73
CDY48241 Canola cytosol 24.54 31.73
CDX96987 Canola cytosol 24.16 31.55
CDX69850 Canola cytosol 24.16 31.55
CDY63926 Canola cytosol 24.16 30.37
CDX81264 Canola cytosol 22.68 29.9
CDX78945 Canola cytosol 5.58 29.41
CDY18689 Canola cytosol 22.68 28.11
CDY09323 Canola extracellular, plastid, vacuole 11.15 26.32
CDY31610 Canola mitochondrion 24.16 25.19
CDX76936 Canola cytosol 24.54 24.0
CDY23446 Canola cytosol 24.54 10.98
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078EP06EnsemblPlants:CDY02896ProteinID:CDY02896ProteinID:CDY02896.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00115128001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF618SMART:SM00173SMART:SM00174SMART:SM00175SUPFAM:SSF52540
InterPro:Small_GTPaseTMHMM:TMhelixUniParc:UPI0004EE4999SEG:seg::
Description
BnaC04g25900D
Coordinates
chrLK031938:+:182832..187266
Molecular Weight (calculated)
29503.2 Da
IEP (calculated)
8.688
GRAVY (calculated)
-0.225
Length
269 amino acids
Sequence
(BLAST)
001: MGHKTITSQL PILLLHLHFL HLSVSFIYFY IFLLSVSPQT TFVNASRPLK KSNKSAGQPS VNTINTSEPG TIHGGTMIND CLPTGFRFNS APSRYINNHA
101: LDRNSGALNG LSSSENADAK NLRVKLVLLG DSGVGKSCIV LRFVRGEFDT TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQESPESFK KAQYWVKELQ
201: KHGAPDIVMA LVGNKADLHE KREVLTDDGM ELAEKNGMFF IDTSAKTADN INQLFEEIGK RLPRPSPSS
Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)
001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
Arabidopsis Description
RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.