Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83275 | Canola | cytosol | 98.39 | 98.61 |
| CDX71438 | Canola | cytosol | 95.85 | 96.97 |
| CDY04504 | Canola | cytosol | 96.31 | 96.76 |
| AT2G27600.1 | Thale cress | cytosol | 95.39 | 95.17 |
| CDX93578 | Canola | cytosol | 92.86 | 93.72 |
| CDX95077 | Canola | cytosol | 92.4 | 93.04 |
| KRH26619 | Soybean | nucleus | 90.78 | 90.37 |
| KRH22691 | Soybean | cytosol | 85.02 | 90.22 |
| KRH30451 | Soybean | cytosol | 89.4 | 89.4 |
| KRH25197 | Soybean | cytosol | 89.4 | 89.4 |
| GSMUA_Achr4P24320_001 | Banana | cytosol | 83.41 | 88.73 |
| VIT_06s0080g00160.t01 | Wine grape | extracellular | 88.48 | 88.68 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 61.52 | 88.12 |
| GSMUA_Achr2P22550_001 | Banana | cytosol | 83.64 | 88.11 |
| EES00346 | Sorghum | cytosol | 88.48 | 88.07 |
| Zm00001d039904_P006 | Maize | cytosol | 88.02 | 87.82 |
| PGSC0003DMT400050194 | Potato | cytosol | 87.1 | 86.9 |
| Solyc11g007170.1.1 | Tomato | cytosol | 80.88 | 86.88 |
| TraesCS3A01G054100.1 | Wheat | cytosol | 87.56 | 86.76 |
| GSMUA_Achr3P01430_001 | Banana | cytosol | 82.03 | 86.62 |
| TraesCS3B01G065200.1 | Wheat | cytosol | 87.33 | 86.53 |
| TraesCS3D01G053600.1 | Wheat | cytosol | 87.1 | 86.3 |
| Zm00001d008596_P005 | Maize | cytosol | 88.25 | 84.18 |
| TraesCS6D01G122900.1 | Wheat | cytosol | 73.5 | 73.0 |
| TraesCS6A01G133300.1 | Wheat | cytosol | 73.5 | 72.83 |
| TraesCS6B01G161700.1 | Wheat | cytosol | 73.04 | 72.54 |
| Os02t0159900-01 | Rice | plasma membrane | 71.66 | 71.82 |
| Os01t0141300-00 | Rice | cytosol | 72.58 | 65.9 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 73.73 | 61.07 |
| CDY18925 | Canola | plastid | 33.18 | 39.78 |
| CDX84641 | Canola | cytosol | 32.49 | 37.6 |
| CDX79566 | Canola | cytosol | 32.49 | 37.5 |
| CDY17260 | Canola | cytosol | 32.95 | 37.34 |
| CDX84306 | Canola | cytosol | 32.72 | 36.79 |
| CDX74745 | Canola | cytosol | 36.18 | 33.05 |
| CDY37046 | Canola | cytosol | 35.25 | 29.94 |
| CDY37590 | Canola | cytosol | 35.02 | 29.75 |
| CDY38662 | Canola | cytosol | 35.02 | 29.46 |
| CDX79393 | Canola | cytosol | 35.48 | 29.11 |
| CDY57698 | Canola | cytosol | 35.48 | 29.0 |
| CDY38752 | Canola | endoplasmic reticulum | 25.58 | 28.76 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 24.88 | 27.76 |
| CDY14372 | Canola | endoplasmic reticulum | 25.35 | 27.71 |
| CDY19035 | Canola | endoplasmic reticulum | 24.88 | 27.55 |
| CDY20251 | Canola | endoplasmic reticulum | 25.35 | 27.36 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 24.65 | 27.3 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 24.42 | 27.11 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 24.42 | 27.11 |
| CDY30236 | Canola | endoplasmic reticulum | 24.42 | 27.04 |
| CDY55344 | Canola | endoplasmic reticulum | 24.42 | 27.04 |
| CDY24618 | Canola | endoplasmic reticulum | 16.82 | 25.98 |
| CDY28494 | Canola | plastid | 32.49 | 21.76 |
| CDY34176 | Canola | plastid | 32.49 | 21.76 |
| CDX92656 | Canola | cytosol | 21.2 | 21.35 |
| CDY27380 | Canola | nucleus | 35.71 | 20.89 |
| CDX96166 | Canola | cytosol | 26.5 | 16.94 |
| CDY19639 | Canola | extracellular, vacuole | 29.26 | 15.82 |
| CDY49165 | Canola | extracellular, plasma membrane | 28.34 | 15.75 |
| CDY56163 | Canola | extracellular, vacuole | 28.8 | 15.53 |
| CDY51824 | Canola | extracellular, plasma membrane | 28.8 | 15.51 |
| CDY08360 | Canola | endoplasmic reticulum | 29.49 | 15.4 |
| CDY38192 | Canola | plasma membrane | 29.26 | 15.28 |
| CDY33415 | Canola | cytosol, mitochondrion | 30.65 | 13.09 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 29.95 | 13.01 |
| CDY45052 | Canola | mitochondrion | 29.72 | 12.91 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 30.18 | 12.58 |
| CDX91317 | Canola | plastid | 28.34 | 11.63 |
| CDX89214 | Canola | extracellular, plasma membrane | 20.05 | 11.48 |
| CDX90936 | Canola | plastid | 28.11 | 11.15 |
| CDY32485 | Canola | plastid | 27.88 | 10.98 |
| CDX97266 | Canola | plastid | 28.11 | 10.79 |
| CDX89933 | Canola | plastid | 27.88 | 10.47 |
| CDY18018 | Canola | plastid | 28.8 | 10.25 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.82 | 10.17 |
| CDY18129 | Canola | cytosol, plastid | 28.34 | 10.13 |
| CDY50381 | Canola | plastid | 27.88 | 10.07 |
| CDY22053 | Canola | plastid | 27.88 | 9.85 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.67 | 9.7 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.67 | 9.66 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:22.5.4.4.1 | Gene3D:3.40.50.300 | GO:A0A078H0A8 | UniProt:A0A078H0A8 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDY31186 | ProteinID:CDY31186 | ProteinID:CDY31186.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00047297001 | InterPro:MIT |
| InterPro:MIT_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF04212 | PFAM:PF09336 | ScanProsite:PS00674 |
| PANTHER:PTHR23074 | PANTHER:PTHR23074:SF137 | SMART:SM00382 | SMART:SM00745 | SUPFAM:SSF116846 | SUPFAM:SSF52540 |
| UniParc:UPI0004EAE271 | InterPro:Vps4_C | SEG:seg | : | : | : |
Description
BnaC03g47050DBnaC03g47050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0A8]
Coordinates
chrLK032268:+:216555..219225
Molecular Weight (calculated)
48325.2 Da
IEP (calculated)
7.134
GRAVY (calculated)
-0.547
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNFKEQAI EYVKQAVQED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGGDAAVA ARPKSKPKDG
101: GGEGGEDAEQ SKLRAGLNSA IVREKPNVKW TDVAGLESAK QALQEAVILP VKYPQFFTGK RRPWRAFLLY GPPGTGKSYL AKAVATEADS TFFSVSSSDL
201: VSKWMGESEK LVSNLFEMAR ESSPSIIFVD EIDSLCGQRG EGNESEASRR IKTELLVQMQ GVGHSDDKVL VLAATNTPYA LDQAIRRRFD KRIYIPLPEA
301: KARQHMFKVH LGDTPHNLTE SDFEYLGLKT EGFSGSDVSV CVKDVLFEPV RKTQDAMFFF KSRDGTWIPC GPRQPGAIQT TMQDLAAKGL AEKIIPPPIT
401: RTDFEKVLAR QRPTVSKSDL DVHERFTQEF GEEG
101: GGEGGEDAEQ SKLRAGLNSA IVREKPNVKW TDVAGLESAK QALQEAVILP VKYPQFFTGK RRPWRAFLLY GPPGTGKSYL AKAVATEADS TFFSVSSSDL
201: VSKWMGESEK LVSNLFEMAR ESSPSIIFVD EIDSLCGQRG EGNESEASRR IKTELLVQMQ GVGHSDDKVL VLAATNTPYA LDQAIRRRFD KRIYIPLPEA
301: KARQHMFKVH LGDTPHNLTE SDFEYLGLKT EGFSGSDVSV CVKDVLFEPV RKTQDAMFFF KSRDGTWIPC GPRQPGAIQT TMQDLAAKGL AEKIIPPPIT
401: RTDFEKVLAR QRPTVSKSDL DVHERFTQEF GEEG
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
Arabidopsis Description
AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.