Factsheet for Os01t0141100-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0151900-01
Os03t0666500-01
Os06t0308800-01
Os10t0441800-01
Os12t0631100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Os03t0151900-01	AT3G54840.1	17468262
AT2G27600.1	Os10t0441800-01	AT3G54840.1	17468262
AT2G27600.1	Os03t0666500-01	AT4G19640.1	17468262
AT2G27600.1	Os12t0631100-01	AT4G19640.1	17468262
AT2G27600.1	Os06t0308800-01	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24320_001	Banana	cytosol	92.74	68.87
EES00346	Sorghum	cytosol	98.35	68.35
Zm00001d039904_P006	Maize	cytosol	97.69	68.05
GSMUA_Achr3P01430_001	Banana	cytosol	91.42	67.4
GSMUA_Achr2P22550_001	Banana	cytosol	91.09	66.99
Solyc11g007170.1.1	Tomato	cytosol	87.13	65.35
TraesCS3D01G053600.1	Wheat	cytosol	94.06	65.07
TraesCS3B01G065200.1	Wheat	cytosol	94.06	65.07
TraesCS3A01G054100.1	Wheat	cytosol	94.06	65.07
CDX93578	Canola	cytosol	92.08	64.88
Bra018640.1-P	Field mustard	cytosol	92.08	64.88
Zm00001d008596_P005	Maize	cytosol	97.36	64.84
KRH25197	Soybean	cytosol	92.08	64.29
CDX95077	Canola	cytosol	91.42	64.27
KRH30451	Soybean	cytosol	91.42	63.82
KRH26619	Soybean	nucleus	91.75	63.76
CDX71438	Canola	cytosol	88.78	62.7
VIT_13s0106g00490.t01	Wine grape	cytosol	89.44	62.44
CDY04504	Canola	cytosol	88.78	62.27
Bra000503.1-P	Field mustard	cytosol	88.78	62.12
CDX83275	Canola	cytosol	88.78	62.12
Bra012009.1-P	Field mustard	cytosol	88.78	62.12
KRH22691	Soybean	cytosol	83.83	62.1
CDY31186	Canola	cytosol	88.12	61.52
AT2G27600.1	Thale cress	cytosol	88.12	61.38
Os02t0159900-01	Rice	plasma membrane	87.13	60.97
PGSC0003DMT400050194	Potato	cytosol	87.13	60.69
HORVU3Hr1G010300.1	Barley	cytosol, plastid	93.73	54.2
Os01t0141300-00	Rice	cytosol	79.87	50.63
Os02t0749150-01	Rice	mitochondrion	31.68	35.82
Os01t0757400-02	Rice	cytosol	42.57	33.42
Os11t0661400-01	Rice	cytosol	26.07	32.78
Os01t0673500-01	Rice	cytosol	42.57	31.46
Os06t0225900-01	Rice	cytosol	35.31	29.16
Os06t0130000-02	Rice	cytosol	42.24	26.28
Os01t0683100-01	Rice	extracellular	44.88	26.2
Os06t0714500-01	Rice	plasma membrane	32.34	24.94
Os03t0344700-01	Rice	cytosol	34.65	13.55
Os01t0623500-01	Rice	cytosol	35.64	13.3
Os01t0226400-01	Rice	plasma membrane	34.98	12.62
Os05t0584600-02	Rice	vacuole	33.66	11.93
Os07t0672500-02	Rice	cytosol, plastid	34.65	9.71
Os12t0443800-01	Rice	nucleus	0.33	0.26

Protein Annotations

Gene3D:1.10.8.60	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	UniProt:A0A0P0UY25	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	ProteinID:BAS70317.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
GO:GO:0016887	EnsemblPlantsGene:Os01g0141100	EnsemblPlants:Os01t0141100-02	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000393B40C
InterPro:Vps4_C	:	:	:	:	:

Description

OsSKD1, SKD1Similar to Salt-induced AAA-Type ATPase. (Os01t0141100-01);Similar to Vacuolar sorting protein 4b. (Os01t0141100-02)

Coordinates

chr1:-:2215676..2222199

Molecular Weight (calculated)

33831.5 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.383

Length

303 amino acids

Sequence
(BLAST)

001: DVAGLESAKQ ALQEAVILPV KFPQFFTGKR RPWRAFLLYG PPGTGKSYLA KAVATEADST FFSISSSDLV SKWMGESEKL VANLFQMARE NAPSIIFIDE
101: IDSLCGQRGE GNESEASRRI KTELLVQMQG VGHNDDKVLV LAATNTPYAL DQAVRRRFDK RIYIPLPDLK ARQHMFKVHL GDTPHNLNES DFENLARRTD
201: GFSGSDIAVC VKDVLFEPVR KTQDAMFFFK ADGDMWMPCG PKQSGAVQTT MQELASKGLA AKILPPPISR TDFEKVLARQ RPTVSKKDLE VHERFTKEFG
301: EEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.