Factsheet for Os12t0631100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 29651780

plasma membrane: 27800704
plasma membrane: 28056797

gfp PMID: 29651780 doi

TTH Chu, TG Hoang, DC Trinh, C Bureau, D Meynard, A Vernet, M Ingouff, NV Do, C Périn, E Guiderdoni, P Gantet, C Maurel, DT Luu

BPMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France., BPMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France. luu@supagro.fr., CIRAD, UMR AGAP, 34398, Montpellier, France., IRD, LMI RICE, Agricultural Genetics Institute, Pham Van Dong road, Co Nhue, Tuliem, Hanoï, Vietnam., National key laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, Pham Van Dong, Co Nhue, Tuliem, Hanoi, Vietnam., University of Science and Technology of Hanoi, LMI RICE, 18 Hoang Quoc Viet, Nghia Do, Cau Giay, Hanoi, Vietnam., Université de Montpellier, CIRAD-INRA-Montpellier SupAgro, 34000, Montpellier, France., Université de Montpellier, UMR DIADE, 911 Avenue Agropolis, 34394, Montpellier Cedex 5, France.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0141100-02
Os01t0141300-00
Os01t0579600-01
Os01t0711500-00
Os02t0159900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	Os01t0141100-02	AT2G27600.1	17468262
AT4G19640.1	Os01t0141300-00	AT2G27600.1	17468262
AT4G19640.1	Os02t0159900-01	AT2G27600.1	17468262
AT4G19640.1	Os01t0579600-01	AT4G33000.1	17825054
AT4G19640.1	Os01t0711500-00	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G002970.1	Barley	plastid	93.6	90.91
KXG24102	Sorghum	cytosol	91.13	90.69
TraesCS5D01G022200.2	Wheat	golgi	92.61	89.95
Zm00001d031179_P001	Maize	extracellular, mitochondrion	89.16	88.73
Os03t0666500-01	Rice	plasma membrane	88.67	88.67
TraesCS5B01G014400.1	Wheat	plastid	91.13	88.52
GSMUA_Achr7P16440_001	Banana	cytosol	83.25	83.66
Solyc02g069370.2.1	Tomato	plastid	80.79	82.0
GSMUA_Achr9P10010_001	Banana	cytosol	81.28	80.49
CDX82579	Canola	cytosol	77.34	78.5
CDY13065	Canola	cytosol	77.34	78.5
KRG98019	Soybean	cytosol	76.85	78.0
CDY39412	Canola	cytosol	76.85	78.0
CDY23153	Canola	cytosol	76.85	78.0
Bra025091.1-P	Field mustard	cytosol	76.85	78.0
AT4G19640.1	Thale cress	cytosol	76.35	77.5
Bra027593.1-P	Field mustard	cytosol	75.86	77.39
Bra013410.1-P	Field mustard	cytosol	75.37	76.5
CDX99356	Canola	cytosol	75.37	76.12
CDX78949	Canola	cytosol	75.37	76.12
PGSC0003DMT400050774	Potato	cytosol	73.4	74.5
PGSC0003DMT400055259	Potato	cytosol, plastid	72.41	73.5
AT5G45130.2	Thale cress	endoplasmic reticulum	74.38	72.6
GSMUA_Achr6P31600_001	Banana	cytosol	71.92	71.57
KRH20053	Soybean	endoplasmic reticulum	76.85	66.95
VIT_04s0079g00760.t01	Wine grape	cytosol	67.49	59.83
Os06t0687100-01	Rice	cytosol	55.17	56.0
Os03t0151900-01	Rice	plasma membrane	52.22	53.27
CDX78945	Canola	cytosol	13.3	52.94
CDY09323	Canola	extracellular, plastid, vacuole	26.11	46.49
Os10t0441800-01	Rice	plasma membrane	51.72	42.0
Os05t0341600-01	Rice	cytosol, plastid	39.41	37.74
Os03t0191400-01	Rice	plasma membrane	38.42	36.28
Os07t0496000-01	Rice	plasma membrane	36.95	36.06

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EntrezGene:4352862	ProteinID:ABG22102.1	EMBL:AK061116	ProteinID:BAF30359.1
ProteinID:BAT18213.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	GO:GO:0030139	EnsemblPlantsGene:Os12g0631100	EnsemblPlants:Os12t0631100-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	UniProt:Q0ILQ6	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000009E30E	RefSeq:XP_015619916.1	:	:	:

Description

GLUTELIN PRECURSOR 4Small GTPase, Storage protein trafficking (Os12t0631100-01);Ras domain containing protein. (Os12t0631100-02)

Coordinates

chr12:+:27022013..27025146

Molecular Weight (calculated)

22147.3 Da

IEP (calculated)

7.412

GRAVY (calculated)

-0.201

Length

203 amino acids

Sequence
(BLAST)

001: MAANPGNKIR NAKLVLLGDV GTGKSSLVLR FVKGQFVEFQ ESTIGAAFFS QTLAVNDETV KFEIWDTAGQ ERYHSLAPMY YRGAAAAIVV YDITNAASFT
101: RAKKWVQELQ AQGNPNTIMA LAGNKADMVE ARQVPAEEAK TYAQENGLFF METSAKTAIN VNDVFHEIAK RLLQGQQAQD TPAGMVLNQR PAERMVSSSS
201: CCS

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.