Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | mitochondrion | 76.42 | 78.26 |
| GSMUA_Achr6P32620_001 | Banana | mitochondrion | 63.68 | 70.31 |
| Os03t0666500-01 | Rice | plasma membrane | 38.68 | 40.39 |
| Os12t0631100-01 | Rice | plasma membrane | 37.74 | 39.41 |
| Os03t0151900-01 | Rice | plasma membrane | 36.79 | 39.2 |
| Os06t0687100-01 | Rice | cytosol | 34.91 | 37.0 |
| Os03t0191400-01 | Rice | plasma membrane | 33.49 | 33.02 |
| Os07t0496000-01 | Rice | plasma membrane | 30.66 | 31.25 |
| Os10t0441800-01 | Rice | plasma membrane | 35.38 | 30.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:4338469 | ProteinID:AAV32114.1 | EMBL:AK111385 | ProteinID:BAF17161.1 |
| ProteinID:BAS93472.1 | ProteinID:EEE63311.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005769 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007186 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019001 |
| GO:GO:0030100 | GO:GO:0031683 | EnsemblPlantsGene:Os05g0341600 | EnsemblPlants:Os05t0341600-01 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF588 | UniProt:Q5WMU2 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| TIGRFAMs:TIGR00231 | UniParc:UPI00004508F7 | RefSeq:XP_015637740.1 | SEG:seg | : | : |
Description
small GTP-binding protein OsRab5D1Similar to Ras-related protein Rab-21. (Os05t0341600-01)
Coordinates
chr5:-:16019207..16023701
Molecular Weight (calculated)
23204.8 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.237
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKPPPPPQ PSVSFKLVLL GDGRVGKTSL VLRYVNDVFS DKQEATVQAS YLTKRLVVEG VPITLSIWDT AGQEKFHALG PIYYRDADAA LLVYDITDND
101: TFLRVTKWVK ELKQMANKDI VMAIAANKSD LVRSKHIDTN EAASYAESIG ATLFVTSAKA GTGIDDIFSD IAKRLLERRK NSSDGLSLAH PKKGILIVDD
201: EPEKEPPPKC CS
101: TFLRVTKWVK ELKQMANKDI VMAIAANKSD LVRSKHIDTN EAASYAESIG ATLFVTSAKA GTGIDDIFSD IAKRLLERRK NSSDGLSLAH PKKGILIVDD
201: EPEKEPPPKC CS
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
Arabidopsis Description
RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.