Factsheet for GSMUA_Achr7P16440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P22550_001
GSMUA_Achr3P01430_001
GSMUA_Achr3P32370_001
GSMUA_Achr4P24320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	GSMUA_Achr2P22550_001	AT2G27600.1	17468262
AT4G19640.1	GSMUA_Achr3P01430_001	AT2G27600.1	17468262
AT4G19640.1	GSMUA_Achr4P24320_001	AT2G27600.1	17468262
AT4G19640.1	GSMUA_Achr3P32370_001	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10010_001	Banana	cytosol	85.64	84.39
Os12t0631100-01	Rice	plasma membrane	83.66	83.25
KXG24102	Sorghum	cytosol	82.67	81.86
Os03t0666500-01	Rice	plasma membrane	82.18	81.77
EER93694	Sorghum	cytosol	82.18	81.77
HORVU5Hr1G002970.1	Barley	plastid	84.16	81.34
Zm00001d031179_P001	Maize	extracellular, mitochondrion	81.68	80.88
Zm00001d013583_P001	Maize	cytosol	81.19	80.79
TraesCS5D01G022200.2	Wheat	golgi	83.17	80.38
TraesCS5B01G014400.1	Wheat	plastid	83.17	80.38
Solyc02g069370.2.1	Tomato	plastid	79.21	80.0
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.19	80.0
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.19	80.0
CDY13065	Canola	cytosol	77.72	78.5
AT4G19640.1	Thale cress	cytosol	77.72	78.5
CDX82579	Canola	cytosol	77.23	78.0
Bra025091.1-P	Field mustard	cytosol	77.23	78.0
CDY39412	Canola	cytosol	77.23	78.0
CDY23153	Canola	cytosol	77.23	78.0
Bra027593.1-P	Field mustard	cytosol	76.24	77.39
CDX99356	Canola	cytosol	76.73	77.11
Bra013410.1-P	Field mustard	cytosol	76.24	77.0
CDX78949	Canola	cytosol	76.24	76.62
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.19	76.28
GSMUA_Achr6P31600_001	Banana	cytosol	75.25	74.51
GSMUA_AchrUn_...	Banana	cytosol	52.48	73.61
AT5G45130.2	Thale cress	endoplasmic reticulum	74.26	72.12
HORVU4Hr1G002980.2	Barley	cytosol	81.19	68.62
Zm00001d034949_P001	Maize	extracellular, mitochondrion	82.67	67.34
GSMUA_Achr4P29680_001	Banana	cytosol	73.76	63.68
CDX78945	Canola	cytosol	15.84	62.75
GSMUA_Achr1P02060_001	Banana	cytosol	73.27	61.92
GSMUA_Achr2P10990_001	Banana	cytosol	73.76	61.83
GSMUA_Achr6P02970_001	Banana	cytosol	60.89	61.5
GSMUA_Achr1P03160_001	Banana	cytosol	50.49	57.95
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	62.87	54.74
CDY09323	Canola	extracellular, plastid, vacuole	28.22	50.0
GSMUA_Achr5P10670_001	Banana	cytosol	47.52	49.74
GSMUA_AchrUn_...	Banana	cytosol	22.77	49.46
GSMUA_Achr4P29310_001	Banana	plastid	50.0	46.12
GSMUA_Achr2P22200_001	Banana	cytosol	39.6	38.65
GSMUA_Achr6P10400_001	Banana	cytosol	39.6	38.65
GSMUA_Achr5P12680_001	Banana	plasma membrane	39.6	38.46
GSMUA_AchrUn_...	Banana	cytosol	39.6	38.46
GSMUA_Achr11P...	Banana	mitochondrion	39.11	38.16
GSMUA_Achr1P00610_001	Banana	cytosol	33.17	37.43
GSMUA_Achr6P32620_001	Banana	mitochondrion	32.18	33.85

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G16440_001	EnsemblPlants:GSMUA_Achr7P16440_001	EnsemblPlants:GSMUA_Achr7T16440_001
UniProt:M0TI31	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294F91B	:	:

Description

Ras-related protein RHA1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16440_001]

Coordinates

chr7:+:14273013..14279316

Molecular Weight (calculated)

22057.3 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.146

Length

202 amino acids

Sequence
(BLAST)

001: MAAPGGNKIR NAKLVLLGDV GTGKSSLVLR FVKGQFVEFQ ESTIGAAFFS QTVAVNDETI KFEIWDTAGQ ERYHSLAPMY YRGAAAAVIV YDMTNAASFT
101: RAKKWVQELQ AQGSPNTIMA LAGNKADLVE ARQVSVEATQ TYAQENGLFF METSAKTAIN VNDIFYEIAK RLTRVQPVQN PQGMALADKP DQRIVNTSSC
201: CS

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.