Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G010300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G19640.1 | HORVU3Hr1G010300.1 | AT2G27600.1 | 17468262 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 85.36 | 99.51 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 84.94 | 99.02 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 85.36 | 94.88 |
| Os03t0666500-01 | Rice | plasma membrane | 80.33 | 94.58 |
| Zm00001d013583_P001 | Maize | cytosol | 76.57 | 90.15 |
| EER93694 | Sorghum | cytosol | 76.57 | 90.15 |
| HORVU5Hr1G002970.1 | Barley | plastid | 76.99 | 88.04 |
| Solyc02g069370.2.1 | Tomato | plastid | 69.04 | 82.5 |
| CDY13065 | Canola | cytosol | 68.2 | 81.5 |
| GSMUA_Achr7P16440_001 | Banana | cytosol | 68.62 | 81.19 |
| CDY23153 | Canola | cytosol | 67.78 | 81.0 |
| Bra027593.1-P | Field mustard | cytosol | 66.95 | 80.4 |
| KRG98019 | Soybean | cytosol | 66.95 | 80.0 |
| GSMUA_Achr9P10010_001 | Banana | cytosol | 68.62 | 80.0 |
| CDY39412 | Canola | cytosol | 66.53 | 79.5 |
| CDX82579 | Canola | cytosol | 66.53 | 79.5 |
| Bra025091.1-P | Field mustard | cytosol | 66.53 | 79.5 |
| AT4G19640.1 | Thale cress | cytosol | 66.11 | 79.0 |
| Bra013410.1-P | Field mustard | cytosol | 65.69 | 78.5 |
| CDX99356 | Canola | cytosol | 65.27 | 77.61 |
| CDX78949 | Canola | cytosol | 65.27 | 77.61 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 79.08 | 76.21 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 62.76 | 75.0 |
| PGSC0003DMT400050774 | Potato | cytosol | 62.76 | 75.0 |
| AT5G45130.2 | Thale cress | endoplasmic reticulum | 64.85 | 74.52 |
| GSMUA_Achr6P31600_001 | Banana | cytosol | 61.09 | 71.57 |
| KRH20053 | Soybean | endoplasmic reticulum | 66.95 | 68.67 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 57.74 | 60.26 |
| CDX78945 | Canola | cytosol | 12.13 | 56.86 |
| HORVU1Hr1G013720.3 | Barley | cytosol, mitochondrion, nucleus | 46.44 | 54.68 |
| HORVU2Hr1G027490.2 | Barley | cytosol, mitochondrion, nucleus | 42.68 | 54.26 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 25.52 | 53.51 |
| HORVU7Hr1G101140.7 | Barley | mitochondrion | 47.7 | 52.53 |
| HORVU4Hr1G072020.1 | Barley | cytosol | 44.35 | 40.77 |
| HORVU2Hr1G050270.2 | Barley | cytosol | 31.38 | 36.06 |
| HORVU4Hr1G078690.2 | Barley | plastid | 32.22 | 25.08 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | UniProt:A0A287MY14 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:HORVU4Hr1G002980 | EnsemblPlants:HORVU4Hr1G002980.2 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000B475140 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr4H:+:5999214..6003662
Molecular Weight (calculated)
26040.9 Da
IEP (calculated)
9.554
GRAVY (calculated)
-0.254
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: IKRKRISYAQ SQPTTNSPIR LLARLQEGPN PASNPMAASA GSKIRNAKLV LLGDVGAGKS SLVLRFVKGQ FVEFQESTIG AAFFSQTLAV NDETVKFEIW
101: DTAGQERYHS LAPMYYRGAA AAIVVYDISN QASFTRAKKW VQELQAQGNQ NTVVALAGNK ADLLEAREVQ IEEAKTYAQE NGLFFMETSA KTATNVNDIF
201: YEIAKRLLQG QAAQNPQAAG MVLSQRPNER VVSAASCCS
101: DTAGQERYHS LAPMYYRGAA AAIVVYDISN QASFTRAKKW VQELQAQGNQ NTVVALAGNK ADLLEAREVQ IEEAKTYAQE NGLFFMETSA KTATNVNDIF
201: YEIAKRLLQG QAAQNPQAAG MVLSQRPNER VVSAASCCS
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
Arabidopsis Description
RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.