Factsheet for TraesCS4B01G019100.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G053300.1
TraesCS3A01G054100.1
TraesCS3A01G208300.2
TraesCS3B01G064500.2
TraesCS3B01G065200.1
TraesCS3B01G235500.1
TraesCS3D01G053600.1
TraesCS3D01G211300.1
TraesCS6A01G133300.1
TraesCS6B01G161700.1
TraesCS6D01G122900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	TraesCS3A01G054100.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS3B01G065200.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS3D01G053600.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS6A01G133300.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS6B01G161700.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS6D01G122900.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS3A01G053300.1	AT4G33000.1	17825054
AT4G19640.1	TraesCS3A01G208300.2	AT4G33000.1	17825054
AT4G19640.1	TraesCS3B01G064500.2	AT4G33000.1	17825054
AT4G19640.1	TraesCS3B01G235500.1	AT4G33000.1	17825054
AT4G19640.1	TraesCS3D01G211300.1	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	99.51	99.51
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	99.51	94.88
Os03t0666500-01	Rice	plasma membrane	93.66	94.58
Zm00001d013583_P001	Maize	cytosol	89.27	90.15
EER93694	Sorghum	cytosol	89.27	90.15
TraesCS5B01G014400.1	Wheat	plastid	87.8	86.12
HORVU4Hr1G002980.2	Barley	cytosol	99.02	84.94
Solyc02g069370.2.1	Tomato	plastid	80.49	82.5
CDY13065	Canola	cytosol	79.51	81.5
GSMUA_Achr7P16440_001	Banana	cytosol	80.0	81.19
CDY23153	Canola	cytosol	79.02	81.0
Bra027593.1-P	Field mustard	cytosol	78.05	80.4
KRG98019	Soybean	cytosol	78.05	80.0
GSMUA_Achr9P10010_001	Banana	cytosol	80.0	80.0
CDY39412	Canola	cytosol	77.56	79.5
CDX82579	Canola	cytosol	77.56	79.5
Bra025091.1-P	Field mustard	cytosol	77.56	79.5
AT4G19640.1	Thale cress	cytosol	77.07	79.0
Bra013410.1-P	Field mustard	cytosol	76.59	78.5
CDX99356	Canola	cytosol	76.1	77.61
CDX78949	Canola	cytosol	76.1	77.61
PGSC0003DMT400050774	Potato	cytosol	73.17	75.0
PGSC0003DMT400055259	Potato	cytosol, plastid	73.17	75.0
AT5G45130.2	Thale cress	endoplasmic reticulum	75.61	74.52
Zm00001d034949_P001	Maize	extracellular, mitochondrion	87.8	72.58
GSMUA_Achr6P31600_001	Banana	cytosol	71.22	71.57
KRH20053	Soybean	endoplasmic reticulum	78.05	68.67
TraesCS7B01G345100.1	Wheat	cytosol	60.98	60.39
VIT_04s0079g00760.t01	Wine grape	cytosol	67.32	60.26
CDX78945	Canola	cytosol	14.15	56.86
CDY09323	Canola	extracellular, plastid, vacuole	29.76	53.51
TraesCS1B01G157100.1	Wheat	cytosol, plastid	51.22	52.5
TraesCS4B01G268600.1	Wheat	plastid	50.73	52.26
TraesCS2B01G261200.1	Wheat	cytosol	36.59	36.06
TraesCS4B01G306900.1	Wheat	cytosol	36.59	35.05

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS4B01G019100	EnsemblPlants:TraesCS4B01G019100.2	TIGR:cd01860	:	:	:

Description

No Description!

Coordinates

chr4B:-:13977250..13981662

Molecular Weight (calculated)

22272.4 Da

IEP (calculated)

7.254

GRAVY (calculated)

-0.144

Length

205 amino acids

Sequence
(BLAST)

001: MAASAGSKIR NAKLVLLGDV GAGKSSLVLR FVKGQFVEFQ ESTIGAAFFS QTLAVNDETV KFEIWDTAGQ ERYHSLAPMY YRGAAAAIVV YDISNQASFT
101: RAKKWVQELQ AQGNQNTVVA LAGNKADLLE AREVQIEEAK TYAQENGLFF METSAKTATN VNDIFYEIAK RLLQGQAAQN PQTAGMVLSQ RPNERVVSAA
201: SCCSS

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.