Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78945 | Canola | cytosol | 36.84 | 82.35 |
| AT4G19640.1 | Thale cress | cytosol | 71.93 | 41.0 |
| CDX99356 | Canola | cytosol | 71.93 | 40.8 |
| CDX78949 | Canola | cytosol | 71.05 | 40.3 |
| CDY39412 | Canola | cytosol | 61.4 | 35.0 |
| CDY23153 | Canola | cytosol | 61.4 | 35.0 |
| CDX82579 | Canola | cytosol | 61.4 | 35.0 |
| CDY13065 | Canola | cytosol | 60.53 | 34.5 |
| Solyc02g069370.2.1 | Tomato | plastid | 56.14 | 32.0 |
| KRG98019 | Soybean | cytosol | 55.26 | 31.5 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 54.39 | 31.0 |
| Os03t0666500-01 | Rice | plasma membrane | 54.39 | 30.54 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 53.51 | 29.76 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 53.51 | 29.76 |
| PGSC0003DMT400050774 | Potato | cytosol | 51.75 | 29.5 |
| Zm00001d031179_P001 | Maize | extracellular, mitochondrion | 52.63 | 29.41 |
| KXG24102 | Sorghum | cytosol | 51.75 | 28.92 |
| Zm00001d013583_P001 | Maize | cytosol | 50.88 | 28.57 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 53.51 | 28.37 |
| GSMUA_Achr7P16440_001 | Banana | cytosol | 50.0 | 28.22 |
| EER93694 | Sorghum | cytosol | 50.0 | 28.08 |
| HORVU5Hr1G002970.1 | Barley | plastid | 50.88 | 27.75 |
| TraesCS5B01G014400.1 | Wheat | plastid | 50.0 | 27.27 |
| KRH20053 | Soybean | endoplasmic reticulum | 55.26 | 27.04 |
| TraesCS5D01G022200.2 | Wheat | golgi | 49.12 | 26.79 |
| GSMUA_Achr9P10010_001 | Banana | cytosol | 47.37 | 26.34 |
| Os12t0631100-01 | Rice | plasma membrane | 46.49 | 26.11 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 53.51 | 25.52 |
| GSMUA_Achr6P31600_001 | Banana | cytosol | 43.86 | 24.51 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 49.12 | 22.58 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 40.35 | 20.09 |
| CDY55834 | Canola | cytosol, plastid | 32.46 | 18.23 |
| CDX78272 | Canola | cytosol | 32.46 | 18.23 |
| CDY61658 | Canola | cytosol | 29.82 | 16.83 |
| CDY48241 | Canola | cytosol | 30.7 | 16.83 |
| CDX74672 | Canola | cytosol | 30.7 | 16.83 |
| CDY30479 | Canola | cytosol | 30.7 | 16.83 |
| CDX83425 | Canola | cytosol | 30.7 | 16.83 |
| CDX95606 | Canola | cytosol | 30.7 | 16.83 |
| CDX81264 | Canola | cytosol | 28.07 | 15.69 |
| CDX69850 | Canola | cytosol | 27.19 | 15.05 |
| CDX96987 | Canola | cytosol | 27.19 | 15.05 |
| CDY13772 | Canola | cytosol | 27.19 | 14.98 |
| CDX81166 | Canola | cytosol | 27.19 | 14.98 |
| CDX78373 | Canola | cytosol | 27.19 | 14.98 |
| CDY18689 | Canola | cytosol | 28.07 | 14.75 |
| CDY63926 | Canola | cytosol | 27.19 | 14.49 |
| CDY31610 | Canola | mitochondrion | 27.19 | 12.02 |
| CDX76936 | Canola | cytosol | 28.07 | 11.64 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 26.32 | 11.15 |
| CDY23446 | Canola | cytosol | 30.7 | 5.82 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078FBM9 | UniProt:A0A078FBM9 | EnsemblPlants:CDY09323 | ProteinID:CDY09323 |
| ProteinID:CDY09323.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00001650001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTPase |
| UniParc:UPI0004EE5D2E | : | : | : | : | : |
Description
BnaC03g63530DBnaC03g63530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBM9]
Coordinates
chrLK031994:+:883064..884117
Molecular Weight (calculated)
12455.1 Da
IEP (calculated)
7.754
GRAVY (calculated)
0.019
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISFFSASY VPCSVTSHAL CPLRVCNACM VVALAGNKSD LLDARKVTSE EAQAYAQENG LFFMETSAKT ETKVKEIFYE IARRLPRVQP TQNPTGMVIP
101: DRAMDRAVSP SCCA
101: DRAMDRAVSP SCCA
001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA
Arabidopsis Description
RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.