CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68299
CDX68929
CDX71438
CDX72384
CDX72833
CDX75314
CDX83275
CDX96350
CDY04300
CDY04504
CDY13513
CDY28278
CDY31186
CDY36679
CDY45024

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	CDX68299	AT1G71830.1	16621602
AT3G54840.1	CDX72833	AT1G71830.1	16621602
AT3G54840.1	CDX96350	AT1G71830.1	16621602
AT3G54840.1	CDY36679	AT1G71830.1	16621602
AT3G54840.1	CDX71438	AT2G27600.1	17468262
AT3G54840.1	CDX83275	AT2G27600.1	17468262
AT3G54840.1	CDY04504	AT2G27600.1	17468262
AT3G54840.1	CDY31186	AT2G27600.1	17468262
AT3G54840.1	CDX68929	AT4G33000.1	17825054
AT3G54840.1	CDX72384	AT4G33000.1	17825054
AT3G54840.1	CDX75314	AT4G33000.1	17825054
AT3G54840.1	CDY04300	AT4G33000.1	17825054
AT3G54840.1	CDY13513	AT4G33000.1	17825054
AT3G54840.1	CDY28278	AT4G33000.1	17825054
AT3G54840.1	CDY45024	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55834	Canola	cytosol, plastid	99.51	99.51
AT3G54840.1	Thale cress	cytosol	92.61	93.07
CDY61658	Canola	cytosol	88.67	89.11
VIT_13s0019g04680.t01	Wine grape	cytosol	84.24	85.5
KRG91957	Soybean	cytosol	82.76	84.0
GSMUA_Achr1P03160_001	Banana	cytosol	72.41	83.52
TraesCS1A01G140700.1	Wheat	cytosol	61.58	81.7
Solyc11g008430.1.1	Tomato	cytosol	80.3	81.5
PGSC0003DMT400019238	Potato	cytosol	80.3	81.5
TraesCS4D01G267900.1	Wheat	cytosol	67.0	81.44
KRH34819	Soybean	cytosol	79.8	79.02
Os03t0151900-01	Rice	plasma membrane	74.88	76.38
OQU93218	Sorghum	plastid	74.38	75.5
TraesCS4A01G035800.1	Wheat	plastid	73.4	74.87
TraesCS4B01G268600.1	Wheat	plastid	73.4	74.87
TraesCS1B01G157100.1	Wheat	cytosol, plastid	73.4	74.5
TraesCS1D01G139500.1	Wheat	cytosol, plastid	72.91	74.0
GSMUA_Achr5P10670_001	Banana	cytosol	69.46	73.06
Bra007104.1-P	Field mustard	endoplasmic reticulum	96.55	70.5
GSMUA_Achr4P29310_001	Banana	plastid	75.37	69.86
Zm00001d048410_P004	Maize	plastid	72.91	69.81
Os10t0441800-01	Rice	plasma membrane	77.34	62.8
CDY02896	Canola	endoplasmic reticulum, golgi	77.83	58.74
HORVU4Hr1G072020.1	Barley	cytosol	72.41	56.54
CDY39412	Canola	cytosol	49.26	50.0
CDX82579	Canola	cytosol	49.26	50.0
CDY23153	Canola	cytosol	49.26	50.0
CDY13065	Canola	cytosol	49.26	50.0
CDX99356	Canola	cytosol	48.28	48.76
CDX78949	Canola	cytosol	47.29	47.76
CDY30479	Canola	cytosol	39.9	38.94
CDX74672	Canola	cytosol	39.9	38.94
CDX83425	Canola	cytosol	39.9	38.94
CDX95606	Canola	cytosol	39.9	38.94
CDY48241	Canola	cytosol	39.9	38.94
CDX81166	Canola	cytosol	38.92	38.16
CDX78373	Canola	cytosol	38.92	38.16
CDX96987	Canola	cytosol	38.42	37.86
CDX69850	Canola	cytosol	38.42	37.86
CDY13772	Canola	cytosol	37.93	37.2
CDX81264	Canola	cytosol	36.45	36.27
CDY63926	Canola	cytosol	37.44	35.51
CDY18689	Canola	cytosol	36.45	34.1
CDX78945	Canola	cytosol	8.37	33.33
CDY09323	Canola	extracellular, plastid, vacuole	18.23	32.46
CDY31610	Canola	mitochondrion	37.44	29.46
CDX76936	Canola	cytosol	37.93	28.0
CDY23446	Canola	cytosol	39.9	13.48

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:A0A078CNC2	EnsemblPlants:CDX78272	ProteinID:CDX78272	ProteinID:CDX78272.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00129614001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EED0D5	:	:

Description

BnaA09g34670D

Coordinates

chrLK031814:+:2125271..2127630

Molecular Weight (calculated)

21876.0 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.226

Length

203 amino acids

Sequence
(BLAST)

001: MGCAASLPGK NSGALNGLTS SENAAPADAK NLRVKLVLLG DSGVGKSCIV LQFVRGQFDA TSKVTVGASF LSQTITLQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPSE DGMELAEKNG MFFIETSAKT ADNINELFQE IGKRLPRPSQ
201: PSS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.