CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00346
EES07030
EES12285
KXG24562
KXG32770
KXG33232

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	EES07030	AT1G71830.1	16621602
AT3G54840.1	EES12285	AT1G71830.1	16621602
AT3G54840.1	KXG24562	AT1G71830.1	16621602
AT3G54840.1	EES00346	AT2G27600.1	17468262
AT3G54840.1	KXG32770	AT4G33000.1	17825054
AT3G54840.1	KXG33232	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0151900-01	Rice	plasma membrane	94.0	94.47
TraesCS4D01G267900.1	Wheat	cytosol	76.5	91.62
TraesCS4A01G035800.1	Wheat	plastid	90.0	90.45
TraesCS4B01G268600.1	Wheat	plastid	90.0	90.45
Zm00001d048410_P004	Maize	plastid	94.5	89.15
GSMUA_Achr1P03160_001	Banana	cytosol	76.5	86.93
VIT_13s0019g04680.t01	Wine grape	cytosol	82.5	82.5
PGSC0003DMT400019238	Potato	cytosol	80.0	80.0
KRG91957	Soybean	cytosol	79.5	79.5
Solyc11g008430.1.1	Tomato	cytosol	79.5	79.5
GSMUA_Achr5P10670_001	Banana	cytosol	76.5	79.27
Bra014785.1-P	Field mustard	cytosol, plastid	76.5	76.88
AT3G54840.1	Thale cress	cytosol	77.0	76.24
CDY61658	Canola	cytosol	76.0	75.25
CDY55834	Canola	cytosol, plastid	76.0	74.88
CDX78272	Canola	cytosol	75.5	74.38
KRH34819	Soybean	cytosol	76.0	74.15
GSMUA_Achr4P29310_001	Banana	plastid	78.0	71.23
HORVU4Hr1G072020.1	Barley	cytosol	89.0	68.46
Bra007104.1-P	Field mustard	endoplasmic reticulum	74.5	53.6
EER93694	Sorghum	cytosol	52.0	51.23
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.5	50.5
KXG24102	Sorghum	cytosol	51.0	50.0
CDY02896	Canola	endoplasmic reticulum, golgi	66.5	49.44
EER97564	Sorghum	cytosol	38.0	36.36
EER97251	Sorghum	cytosol	37.5	36.06
KXG39985	Sorghum	cytosol	36.0	33.8

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EntrezGene:8085466	UniProt:A0A1Z5SBC0	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005769	GO:GO:0005829	GO:GO:0006810
GO:GO:0008150	GO:GO:0010009	GO:GO:0016020	GO:GO:0016787	GO:GO:0045022	EnsemblPlants:OQU93218
ProteinID:OQU93218	ProteinID:OQU93218.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3001G501200	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A82B42
RefSeq:XP_002465841.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:77038372..77043588

Molecular Weight (calculated)

21618.5 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.207

Length

200 amino acids

Sequence
(BLAST)

001: MGCSSSVPAR STGGLNTISN DSSPATDSKD LRAKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTLALEDST IVKFEIWDTA GQERYAALAP
101: LYYRGAAAAI VVYDITSPES FSKAQYWVKE LQKHGSPGIV MVLVGNKADL HDNRSVSSQD AQDYAEKNNM FFIETSAKTA DNINQLFEEI AKRLPRPTAS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.