Factsheet for Bra014785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000503.1-P
Bra003911.1-P
Bra011404.1-P
Bra012009.1-P
Bra016112.1-P
Bra034543.1-P
Bra037030.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	Bra003911.1-P	AT1G71830.1	16621602
AT3G54840.1	Bra016112.1-P	AT1G71830.1	16621602
AT3G54840.1	Bra000503.1-P	AT2G27600.1	17468262
AT3G54840.1	Bra012009.1-P	AT2G27600.1	17468262
AT3G54840.1	Bra011404.1-P	AT4G33000.1	17825054
AT3G54840.1	Bra034543.1-P	AT4G33000.1	17825054
AT3G54840.1	Bra037030.1-P	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61658	Canola	cytosol	95.98	94.55
AT3G54840.1	Thale cress	cytosol	93.97	92.57
VIT_13s0019g04680.t01	Wine grape	cytosol	86.93	86.5
KRG91957	Soybean	cytosol	84.92	84.5
GSMUA_Achr1P03160_001	Banana	cytosol	73.87	83.52
Solyc11g008430.1.1	Tomato	cytosol	83.92	83.5
PGSC0003DMT400019238	Potato	cytosol	83.92	83.5
TraesCS4D01G267900.1	Wheat	cytosol	68.84	82.04
TraesCS1A01G140700.1	Wheat	cytosol	62.31	81.05
KRH34819	Soybean	cytosol	81.91	79.51
Os03t0151900-01	Rice	plasma membrane	77.39	77.39
OQU93218	Sorghum	plastid	76.88	76.5
TraesCS4A01G035800.1	Wheat	plastid	75.38	75.38
TraesCS4B01G268600.1	Wheat	plastid	75.38	75.38
GSMUA_Achr5P10670_001	Banana	cytosol	72.86	75.13
TraesCS1B01G157100.1	Wheat	cytosol, plastid	74.87	74.5
TraesCS1D01G139500.1	Wheat	cytosol, plastid	74.87	74.5
Zm00001d048410_P004	Maize	plastid	75.38	70.75
GSMUA_Achr4P29310_001	Banana	plastid	76.88	69.86
Bra007104.1-P	Field mustard	endoplasmic reticulum	90.95	65.11
Os10t0441800-01	Rice	plasma membrane	78.89	62.8
CDY02896	Canola	endoplasmic reticulum, golgi	83.92	62.08
HORVU4Hr1G072020.1	Barley	cytosol	74.87	57.31
Bra027593.1-P	Field mustard	cytosol	50.75	50.75
Bra025091.1-P	Field mustard	cytosol	50.75	50.5
Bra013410.1-P	Field mustard	cytosol	48.74	48.5
Bra037641.1-P	Field mustard	cytosol	40.2	38.46
Bra000355.1-P	Field mustard	cytosol	40.2	38.46
Bra006054.1-P	Field mustard	cytosol	39.7	38.16
Bra004850.1-P	Field mustard	cytosol	39.7	37.98
Bra009046.1-P	Field mustard	cytosol	38.69	37.38
Bra038535.1-P	Field mustard	cytosol	38.69	37.2
Bra037802.1-P	Field mustard	cytosol	32.66	32.99
Bra017875.1-P	Field mustard	mitochondrion	38.19	29.46

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra014785	EnsemblPlants:Bra014785.1	EnsemblPlants:Bra014785.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DE66	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002544CFE	:	:

Description

AT3G54840 (E=4e-100) ARA6, ATRABF1, ARA-6, ATRAB5C | ARA6; GTP binding / GTPase

Coordinates

chrA04:-:3126364..3127689

Molecular Weight (calculated)

21507.6 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.164

Length

199 amino acids

Sequence
(BLAST)

001: MGCAASLPGK NSGALNGLSS SENADAKNLR VKLVLLGDSG VGKSCIVLRF VRGEFDATSK VTVGASFLSQ TIALQDSTTV KFEIWDTAGQ ERYSALAPLY
101: YRGAAVAVIV YDITSPESFK KAQYWVKELQ KHGAPDIVMA LVGNKADLHE KREVLTDDGM ELAEKNGMFF IETSAKTADN INQLFEEIGK RLPRPSPSS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.