Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G157100.1 | Wheat | cytosol, plastid | 96.08 | 73.5 |
| TraesCS1D01G139500.1 | Wheat | cytosol, plastid | 95.42 | 73.0 |
| GSMUA_Achr1P03160_001 | Banana | cytosol | 81.05 | 70.45 |
| PGSC0003DMT400019238 | Potato | cytosol | 83.66 | 64.0 |
| Solyc11g008430.1.1 | Tomato | cytosol | 83.66 | 64.0 |
| TraesCS4A01G035800.1 | Wheat | plastid | 83.01 | 63.82 |
| VIT_13s0019g04680.t01 | Wine grape | cytosol | 83.01 | 63.5 |
| AT3G54840.1 | Thale cress | cytosol | 83.01 | 62.87 |
| KRG91957 | Soybean | cytosol | 81.7 | 62.5 |
| Bra014785.1-P | Field mustard | cytosol, plastid | 81.05 | 62.31 |
| CDY55834 | Canola | cytosol, plastid | 82.35 | 62.07 |
| CDX78272 | Canola | cytosol | 81.7 | 61.58 |
| CDY61658 | Canola | cytosol | 80.39 | 60.89 |
| GSMUA_Achr5P10670_001 | Banana | cytosol | 75.16 | 59.59 |
| KRH34819 | Soybean | cytosol | 77.78 | 58.05 |
| GSMUA_Achr4P29310_001 | Banana | plastid | 79.08 | 55.25 |
| Os10t0441800-01 | Rice | plasma membrane | 90.2 | 55.2 |
| Bra007104.1-P | Field mustard | endoplasmic reticulum | 81.7 | 44.96 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 60.13 | 44.88 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 68.63 | 39.03 |
| TraesCS2A01G236600.1 | Wheat | cytosol | 43.79 | 32.21 |
| TraesCS4A01G407500.1 | Wheat | cytosol | 41.83 | 29.91 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF618 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS1A01G140700 | EnsemblPlants:TraesCS1A01G140700.1 |
| TIGR:cd01860 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:238656184..238670642
Molecular Weight (calculated)
17047.3 Da
IEP (calculated)
6.262
GRAVY (calculated)
-0.290
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVLLGDSGV GKSCIVLRFV RGQFDPTSKD STTVKFEIWD TAGQERYAAL APLYYRGAGA AIVVYDITSA ESFIKAQYWV KELQKHGSQD MIMALVGNKA
101: DLHEKRTVSS QEAQEHADMN NMFFVETSAK TADNINQLFE EIAKRLPRPT PPS
101: DLHEKRTVSS QEAQEHADMN NMFFVETSAK TADNINQLFE EIAKRLPRPT PPS
001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
Arabidopsis Description
RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.