Factsheet for Bra038535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13772	Canola	cytosol	100.0	100.0
AT2G22290.1	Thale cress	cytosol	95.65	95.65
KRH59334	Soybean	endoplasmic reticulum	88.89	88.89
KRH43179	Soybean	cytosol	88.89	88.89
KRG97576	Soybean	cytosol	88.41	88.41
KRH31293	Soybean	cytosol	74.88	87.08
PGSC0003DMT400056111	Potato	cytosol	86.96	86.96
Bra009046.1-P	Field mustard	cytosol	86.47	86.89
Zm00001d006905_P001	Maize	mitochondrion	87.44	86.6
EER97564	Sorghum	cytosol	87.44	86.6
Solyc03g078570.2.1	Tomato	cytosol	86.47	86.47
Bra006054.1-P	Field mustard	cytosol	85.99	85.99
GSMUA_Achr2P22200_001	Banana	cytosol	85.99	85.99
GSMUA_Achr6P10400_001	Banana	cytosol	85.99	85.99
VIT_00s0665g00040.t01	Wine grape	extracellular	73.91	85.96
Bra037641.1-P	Field mustard	cytosol	83.57	83.17
Bra004850.1-P	Field mustard	cytosol	83.09	82.69
Bra000355.1-P	Field mustard	cytosol	82.61	82.21
Os03t0191400-01	Rice	plasma membrane	78.26	75.35
KXG39985	Sorghum	cytosol	77.29	75.12
TraesCS4D01G305100.1	Wheat	cytosol	76.33	73.83
TraesCS4A01G407500.1	Wheat	cytosol	75.85	73.36
TraesCS4B01G306900.1	Wheat	cytosol	75.36	72.9
Bra037802.1-P	Field mustard	cytosol	67.15	70.56
CDX76936	Canola	cytosol	91.3	68.73
Bra017875.1-P	Field mustard	mitochondrion	84.06	67.44
Zm00001d028012_P001	Maize	cytosol, extracellular	64.73	60.36
HORVU4Hr1G078690.2	Barley	plastid	75.85	51.14
Bra014785.1-P	Field mustard	cytosol, plastid	37.2	38.69
Bra025091.1-P	Field mustard	cytosol	36.72	38.0
Bra013410.1-P	Field mustard	cytosol	36.72	38.0
Bra027593.1-P	Field mustard	cytosol	36.23	37.69
Bra007104.1-P	Field mustard	endoplasmic reticulum	36.72	27.34

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra038535	EnsemblPlants:Bra038535.1	EnsemblPlants:Bra038535.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0016787	UniProt:M4FBR9
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002541F5B	SEG:seg	:	:

Description

AT2G22290 (E=2e-093) ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6 | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding

Coordinates

chrA09:-:5154162..5155378

Molecular Weight (calculated)

23047.5 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.215

Length

207 amino acids

Sequence
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VSNRLSFLNT
101: SKWIEEVRTE RAGDVIIVLV GNKTDLVDKR QVSIEEGDSK GREYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMDSYSNMK TEDMVDVNLK ATSNSSQGDQ
201: QGGGCSC

Best Arabidopsis Sequence Match ( AT2G22290.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VANRLSFLNT
101: SKWIEEVRNE RAGDVIIVLV GNKTDLVEKR QVSIEEGDSK GREYGVMFIE TSAKAGFNIK PLFRKIAAAL PGMESYSNTK NEDMVDVNLK PTSNSSQGDQ
201: QGGACSC

Arabidopsis Description

RABH1DRas-related protein RABH1d [Source:UniProtKB/Swiss-Prot;Acc:Q9SID8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.