Factsheet for PGSC0003DMT400056111

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 3
mitochondrion 2
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g078570.2.1	Tomato	cytosol	99.52	99.52
KRH31293	Soybean	cytosol	80.68	93.82
KRH43179	Soybean	cytosol	93.72	93.72
KRH59334	Soybean	endoplasmic reticulum	93.72	93.72
KRG97576	Soybean	cytosol	92.75	92.75
PGSC0003DMT400018619	Potato	cytosol	92.27	92.27
VIT_00s0665g00040.t01	Wine grape	extracellular	78.74	91.57
GSMUA_Achr6P10400_001	Banana	cytosol	89.86	89.86
PGSC0003DMT400004322	Potato	cytosol	89.86	89.42
AT2G22290.1	Thale cress	cytosol	88.89	88.89
GSMUA_Achr2P22200_001	Banana	cytosol	88.41	88.41
Zm00001d006905_P001	Maize	mitochondrion	87.92	87.08
EER97564	Sorghum	cytosol	87.92	87.08
Bra038535.1-P	Field mustard	cytosol	86.96	86.96
CDY13772	Canola	cytosol	86.96	86.96
Os03t0191400-01	Rice	plasma membrane	81.64	78.6
KXG39985	Sorghum	cytosol	78.74	76.53
TraesCS4D01G305100.1	Wheat	cytosol	78.74	76.17
TraesCS4A01G407500.1	Wheat	cytosol	78.26	75.7
TraesCS4B01G306900.1	Wheat	cytosol	77.78	75.23
Zm00001d028012_P001	Maize	cytosol, extracellular	67.63	63.06
CDX76936	Canola	cytosol	80.68	60.73
HORVU4Hr1G078690.2	Barley	plastid	77.78	52.44
PGSC0003DMT400019238	Potato	cytosol	37.68	39.0
PGSC0003DMT400050774	Potato	cytosol	35.27	36.5
PGSC0003DMT400055259	Potato	cytosol, plastid	34.78	36.0

Protein Annotations

EntrezGene:102600575	MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0016787	UniProt:M1BYY8	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400021796	PGSC:PGSC0003DMG400021796	EnsemblPlants:PGSC0003DMT400056111	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF630	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002949F41	RefSeq:XP_006366321.1	RefSeq:XP_015160317.1

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021796]

Coordinates

chr3:-:32761615..32764135

Molecular Weight (calculated)

23154.7 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.258

Length

207 amino acids

Sequence
(BLAST)

001: MSVVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEEVRTE RGSDVIIVLV GNKTDLVEKR QVSTEEGDAK SREFGVMYVE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK PTTNTSQSEQ
201: QGGGCAC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.