Factsheet for Bra009046.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69850	Canola	cytosol	100.0	100.0
Bra006054.1-P	Field mustard	cytosol	94.17	93.72
AT5G10260.1	Thale cress	cytosol	92.23	91.79
Bra038535.1-P	Field mustard	cytosol	86.89	86.47
Bra037641.1-P	Field mustard	cytosol	85.92	85.1
Bra004850.1-P	Field mustard	cytosol	85.44	84.62
Bra000355.1-P	Field mustard	cytosol	84.95	84.13
GSMUA_Achr6P10400_001	Banana	cytosol	84.47	84.06
GSMUA_Achr2P22200_001	Banana	cytosol	83.5	83.09
Zm00001d006905_P001	Maize	mitochondrion	83.98	82.78
EER97564	Sorghum	cytosol	83.01	81.82
Os03t0191400-01	Rice	plasma membrane	78.16	74.88
KXG39985	Sorghum	cytosol	76.7	74.18
TraesCS4D01G305100.1	Wheat	cytosol	76.7	73.83
TraesCS4A01G407500.1	Wheat	cytosol	76.7	73.83
TraesCS4B01G306900.1	Wheat	cytosol	75.73	72.9
Bra037802.1-P	Field mustard	cytosol	69.42	72.59
Bra017875.1-P	Field mustard	mitochondrion	80.58	64.34
Zm00001d028012_P001	Maize	cytosol, extracellular	65.05	60.36
HORVU4Hr1G078690.2	Barley	plastid	76.21	51.14
Bra014785.1-P	Field mustard	cytosol, plastid	37.38	38.69
Bra025091.1-P	Field mustard	cytosol	37.38	38.5
Bra013410.1-P	Field mustard	cytosol	36.89	38.0
Bra027593.1-P	Field mustard	cytosol	36.41	37.69
Bra007104.1-P	Field mustard	endoplasmic reticulum	37.38	27.7

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	ProteinID:AAZ67607	ProteinID:AAZ67607.1	EMBL:AC155344	EnsemblPlantsGene:Bra009046
EnsemblPlants:Bra009046.1	EnsemblPlants:Bra009046.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF630	UniProt:Q4ABP5	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000058C645	SEG:seg	:	:	:	:

Description

AT5G10260 (E=3e-100) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding

Coordinates

chrA10:-:15016431..15017898

Molecular Weight (calculated)

22964.4 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.218

Length

206 amino acids

Sequence
(BLAST)

001: MAAVTPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYMEDRTLRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDFGVIFIE TSAKAGFNIK PLFRKISAAL PGMDTLSTRQ GDMVDVNLRS STNASQGEQQ
201: GGGCSC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.