Factsheet for TraesCS5D01G022200.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G053300.1
TraesCS3A01G054100.1
TraesCS3A01G208300.2
TraesCS3B01G064500.2
TraesCS3B01G065200.1
TraesCS3B01G235500.1
TraesCS3D01G053600.1
TraesCS3D01G211300.1
TraesCS6A01G133300.1
TraesCS6B01G161700.1
TraesCS6D01G122900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	TraesCS3A01G054100.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS3B01G065200.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS3D01G053600.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS6A01G133300.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS6B01G161700.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS6D01G122900.1	AT2G27600.1	17468262
AT4G19640.1	TraesCS3A01G053300.1	AT4G33000.1	17825054
AT4G19640.1	TraesCS3A01G208300.2	AT4G33000.1	17825054
AT4G19640.1	TraesCS3B01G064500.2	AT4G33000.1	17825054
AT4G19640.1	TraesCS3B01G235500.1	AT4G33000.1	17825054
AT4G19640.1	TraesCS3D01G211300.1	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G002970.1	Barley	plastid	99.04	99.04
TraesCS5B01G014400.1	Wheat	plastid	98.56	98.56
Os12t0631100-01	Rice	plasma membrane	89.95	92.61
KXG24102	Sorghum	cytosol	87.56	89.71
Zm00001d031179_P001	Maize	extracellular, mitochondrion	85.65	87.75
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	87.56	85.12
GSMUA_Achr7P16440_001	Banana	cytosol	80.38	83.17
Solyc02g069370.2.1	Tomato	plastid	78.47	82.0
GSMUA_Achr9P10010_001	Banana	cytosol	77.99	79.51
CDY13065	Canola	cytosol	76.08	79.5
CDY23153	Canola	cytosol	75.6	79.0
CDX82579	Canola	cytosol	75.12	78.5
Bra025091.1-P	Field mustard	cytosol	75.12	78.5
CDY39412	Canola	cytosol	75.12	78.5
KRG98019	Soybean	cytosol	75.12	78.5
Bra027593.1-P	Field mustard	cytosol	74.64	78.39
AT4G19640.1	Thale cress	cytosol	74.16	77.5
Bra013410.1-P	Field mustard	cytosol	73.21	76.5
CDX99356	Canola	cytosol	73.21	76.12
CDX78949	Canola	cytosol	73.21	76.12
PGSC0003DMT400050774	Potato	cytosol	70.81	74.0
PGSC0003DMT400055259	Potato	cytosol, plastid	70.81	74.0
AT5G45130.2	Thale cress	endoplasmic reticulum	72.73	73.08
GSMUA_Achr6P31600_001	Banana	cytosol	68.9	70.59
KRH20053	Soybean	endoplasmic reticulum	75.12	67.38
TraesCS4D01G267900.1	Wheat	cytosol	48.33	60.48
TraesCS7D01G433800.1	Wheat	cytosol	59.81	60.1
VIT_04s0079g00760.t01	Wine grape	cytosol	65.55	59.83
CDX78945	Canola	cytosol	12.92	52.94
TraesCS1D01G139500.1	Wheat	cytosol, plastid	50.24	52.5
CDY09323	Canola	extracellular, plastid, vacuole	26.79	49.12
TraesCS2D01G234600.1	Wheat	plastid	34.93	35.1
TraesCS4D01G305100.1	Wheat	cytosol	35.41	34.58

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5D01G022200
EnsemblPlants:TraesCS5D01G022200.2	TIGR:cd01860	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:14974525..14977469

Molecular Weight (calculated)

22459.7 Da

IEP (calculated)

7.254

GRAVY (calculated)

-0.091

Length

209 amino acids

Sequence
(BLAST)

001: MAANAGAGAG GSKIRNAKLV LLGDVGTGKS SLVLRFVKGQ FVEFQESTIG AAFFSQTLAV NDETVKFEIW DTAGQERYHS LAPMYYRGAA AAIVVYDITN
101: AASFTRAKKW VQELQAQGNP NTVMALAGNK ADMLEARQVP VEEATTYAQE NGLFFIETSA KTAINVNDVF YELAKRLLAG QQAQNPQAGM VLSQRPAERM
201: VSSTSCCSS

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.