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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • extracellular 4
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG20883 Sorghum endoplasmic reticulum 93.13 93.61
Zm00001d014775_P002 Maize plastid 91.86 92.33
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 90.08 89.85
TraesCS7B01G287800.1 Wheat golgi 84.22 88.74
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 83.72 88.44
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 83.46 87.94
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 81.42 82.47
GSMUA_Achr11P... Banana endoplasmic reticulum 81.17 82.22
HORVU7Hr1G091480.2 Barley plastid 87.79 79.86
PGSC0003DMT400047633 Potato endoplasmic reticulum 72.01 74.87
Zm00001d036410_P002 Maize plastid 90.59 74.79
KRH53570 Soybean endoplasmic reticulum, plasma membrane 74.3 74.49
Solyc03g082630.2.1 Tomato endoplasmic reticulum 71.25 74.27
KRH64362 Soybean endoplasmic reticulum, plasma membrane 74.05 74.23
Solyc06g053160.2.1 Tomato endoplasmic reticulum, plasma membrane 73.54 73.72
KRH15897 Soybean endoplasmic reticulum 73.03 73.59
PGSC0003DMT400013963 Potato endoplasmic reticulum 73.03 73.21
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 73.54 72.61
CDY55344 Canola endoplasmic reticulum 71.76 71.94
CDY30236 Canola endoplasmic reticulum 71.76 71.94
Bra026316.1-P Field mustard endoplasmic reticulum 71.76 71.94
Bra019030.1-P Field mustard endoplasmic reticulum, plasma membrane 71.76 71.94
CDY71574 Canola endoplasmic reticulum, plasma membrane 71.5 71.68
CDY29857 Canola endoplasmic reticulum, plasma membrane 71.25 71.61
CDX92836 Canola endoplasmic reticulum, plasma membrane 71.25 71.61
CDY19035 Canola endoplasmic reticulum 71.25 71.43
CDY14372 Canola endoplasmic reticulum 71.5 70.78
Bra003048.1-P Field mustard endoplasmic reticulum 71.25 70.53
CDY20251 Canola endoplasmic reticulum 71.76 70.15
AT5G53540.1 Thale cress endoplasmic reticulum 71.76 69.98
PGSC0003DMT400031598 Potato endoplasmic reticulum 63.87 69.92
CDY38752 Canola endoplasmic reticulum 67.43 68.65
Solyc08g083020.2.1 Tomato plastid 62.34 68.25
CDY47077 Canola endoplasmic reticulum, plasma membrane 65.14 65.81
Bra029063.1-P Field mustard endoplasmic reticulum 64.89 65.22
Os11t0661400-01 Rice cytosol 25.45 41.49
Os02t0749150-01 Rice mitochondrion 27.48 40.3
Os06t0225900-01 Rice cytosol 34.86 37.33
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 73.28 37.31
Os01t0141100-02 Rice cytosol, plasma membrane 24.94 32.34
Os01t0757400-02 Rice cytosol 29.26 29.79
Os01t0673500-01 Rice cytosol 28.75 27.56
Os02t0159900-01 Rice plasma membrane 27.23 24.71
Os06t0130000-02 Rice cytosol 29.01 23.41
Os03t0344700-01 Rice cytosol 41.22 20.9
Os01t0683100-01 Rice extracellular 27.48 20.81
Os01t0141300-00 Rice cytosol 24.94 20.5
Os01t0623500-01 Rice cytosol 38.93 18.84
Os05t0584600-02 Rice vacuole 40.46 18.6
Os01t0226400-01 Rice plasma membrane 38.68 18.1
Os07t0672500-02 Rice cytosol, plastid 41.22 14.99
Os12t0443800-01 Rice nucleus 1.78 1.83
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1EntrezGene:4342062InterPro:AAA+_ATPaseEMBL:AK100047
InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreProteinID:BAD53565.1ProteinID:BAF20489.1ProteinID:BAS99483.1ProteinID:EAZ38273.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0016887EnsemblPlantsGene:Os06g0714500EnsemblPlants:Os06t0714500-01InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674
PFscan:PS51257PANTHER:PTHR23074PANTHER:PTHR23074:SF20UniProt:Q5Z9Q8SMART:SM00382SUPFAM:SSF52540
TMHMM:TMhelixUniParc:UPI0000446DB4RefSeq:XP_015642678.1SEG:seg::
Description
ATPase, AAA-type, core domain containing protein. (Os06t0714500-01)
Coordinates
chr6:+:30332480..30336108
Molecular Weight (calculated)
43697.5 Da
IEP (calculated)
7.962
GRAVY (calculated)
-0.254
Length
393 amino acids
Sequence
(BLAST)
001: MRSSESSRFV QELVLYAASA ALSCLVLFAG LRQLDPNRAA SQKALQHKKE IAKRLGRPLV STTPYEDVIA CDVINPDHID VEFDSIGGLD HVKQALYELV
101: ILPLRRPELF TFGKLLSPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RISNLMSKWF GDAQKLVSAV FSLAHKLQPA IIFIDEVDSF LGQRRTTDHE
201: AMTNMKTEFM SLWDGFTTDQ NARVMVLAAT NRPSELDEAI LRRFTQIFEI GIPVQSERSK ILRVVLKGEN VEPNINYDYI AGLCEGFTGS DILELCKQAA
301: FYPIRELLNN EKDGRKADKP RPLRQSDLEK ALSTSRKGKR AANGTSTGLQ SPVWIRPSDS EDDQVQSAIF EISKLMSRIV QNSQSEPQEP SSP
Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [plasma membrane,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.