Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019030.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 92.21 | 93.62 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 91.96 | 93.37 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 91.71 | 93.35 |
| Bra026316.1-P | Field mustard | endoplasmic reticulum | 91.71 | 93.11 |
| CDY30236 | Canola | endoplasmic reticulum | 91.71 | 93.11 |
| CDY55344 | Canola | endoplasmic reticulum | 91.71 | 93.11 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 91.46 | 93.09 |
| CDY19035 | Canola | endoplasmic reticulum | 90.7 | 92.09 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 81.91 | 83.16 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 81.16 | 82.4 |
| PGSC0003DMT400013963 | Potato | endoplasmic reticulum | 80.4 | 81.63 |
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 80.15 | 81.38 |
| KRH15897 | Soybean | endoplasmic reticulum | 78.39 | 80.0 |
| AT5G53540.1 | Thale cress | endoplasmic reticulum | 80.9 | 79.9 |
| PGSC0003DMT400047633 | Potato | endoplasmic reticulum | 75.13 | 79.1 |
| Solyc03g082630.2.1 | Tomato | endoplasmic reticulum | 74.62 | 78.78 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 75.38 | 77.32 |
| GSMUA_Achr4P05220_001 | Banana | endoplasmic reticulum | 74.12 | 76.03 |
| KXG20883 | Sorghum | endoplasmic reticulum | 72.61 | 73.91 |
| TraesCS7D01G381400.1 | Wheat | endoplasmic reticulum | 68.84 | 73.66 |
| Os06t0714500-01 | Rice | plasma membrane | 72.61 | 73.54 |
| TraesCS7B01G287800.1 | Wheat | golgi | 68.84 | 73.46 |
| TraesCS7A01G384900.1 | Wheat | endoplasmic reticulum | 68.59 | 73.19 |
| Zm00001d014775_P002 | Maize | plastid | 71.61 | 72.89 |
| HORVU0Hr1G021880.1 | Barley | endoplasmic reticulum | 71.86 | 72.59 |
| HORVU7Hr1G091480.2 | Barley | plastid | 70.85 | 65.28 |
| Zm00001d036410_P002 | Maize | plastid | 72.36 | 60.5 |
| VIT_16s0098g01260.t01 | Wine grape | endoplasmic reticulum | 79.65 | 41.06 |
| AT2G34560.2 | Thale cress | cytosol | 27.14 | 27.48 |
| AT2G27600.1 | Thale cress | cytosol | 26.88 | 24.6 |
| AT2G45500.5 | Thale cress | cytosol | 28.64 | 22.94 |
| AT1G80350.1 | Thale cress | cytosol | 27.39 | 20.84 |
| AT1G64110.2 | Thale cress | cytosol | 41.21 | 19.78 |
| AT5G52882.1 | Thale cress | extracellular, vacuole | 40.45 | 19.42 |
| AT4G28000.2 | Thale cress | extracellular | 39.2 | 18.75 |
| AT3G27120.1 | Thale cress | nucleus | 29.4 | 17.21 |
| AT1G50140.1 | Thale cress | mitochondrion | 38.94 | 15.45 |
| AT3G19740.1 | Thale cress | cytosol, mitochondrion, plastid | 38.19 | 15.31 |
| AT4G24860.1 | Thale cress | cytosol, plastid | 40.7 | 14.44 |
| AT1G62130.1 | Thale cress | cytosol, plastid | 36.43 | 13.9 |
| AT1G02890.1 | Thale cress | plastid | 42.21 | 13.48 |
| AT4G02480.1 | Thale cress | plastid | 42.46 | 13.36 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:828882 | UniProt:A0A178V5Z4 | InterPro:AAA+_ATPase |
| ProteinID:AEE85380.1 | EMBL:AK226334 | ArrayExpress:AT4G27680 | EnsemblPlantsGene:AT4G27680 | RefSeq:AT4G27680 | TAIR:AT4G27680 |
| RefSeq:AT4G27680-TAIR-G | EnsemblPlants:AT4G27680.1 | TAIR:AT4G27680.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY085265 |
| EMBL:AY093063 | Unigene:At.32076 | EMBL:BT000126 | ProteinID:CAB38280.1 | ProteinID:CAB81418.1 | GO:GO:0000166 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016887 | RefSeq:NP_194498.1 | ProteinID:OAP01108.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF20 | UniProt:Q9T090 | SMART:SM00382 |
| SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI00000AC2F9 | : | : | : |
Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
Coordinates
chr4:+:13821019..13823408
Molecular Weight (calculated)
44204.2 Da
IEP (calculated)
6.034
GRAVY (calculated)
-0.229
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.