Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0714500-01 | Rice | plasma membrane | 92.33 | 91.86 |
| HORVU0Hr1G021880.1 | Barley | endoplasmic reticulum | 87.47 | 86.8 |
| TraesCS7D01G381400.1 | Wheat | endoplasmic reticulum | 81.07 | 85.22 |
| TraesCS7B01G287800.1 | Wheat | golgi | 81.07 | 84.99 |
| TraesCS7A01G384900.1 | Wheat | endoplasmic reticulum | 80.82 | 84.72 |
| GSMUA_Achr4P05220_001 | Banana | endoplasmic reticulum | 80.31 | 80.93 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 80.05 | 80.67 |
| HORVU7Hr1G091480.2 | Barley | plastid | 85.42 | 77.31 |
| Zm00001d036410_P002 | Maize | plastid | 93.09 | 76.47 |
| PGSC0003DMT400047633 | Potato | endoplasmic reticulum | 71.61 | 74.07 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 74.17 | 73.98 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 73.91 | 73.72 |
| Solyc03g082630.2.1 | Tomato | endoplasmic reticulum | 70.84 | 73.47 |
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 73.4 | 73.21 |
| KRH15897 | Soybean | endoplasmic reticulum | 72.89 | 73.08 |
| PGSC0003DMT400013963 | Potato | endoplasmic reticulum | 72.89 | 72.7 |
| PGSC0003DMT400031598 | Potato | endoplasmic reticulum | 66.24 | 72.14 |
| AT4G27680.1 | Thale cress | endoplasmic reticulum, plasma membrane | 72.89 | 71.61 |
| Bra019030.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 71.36 | 71.17 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 71.1 | 71.1 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 71.1 | 71.1 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 71.1 | 70.92 |
| Bra026316.1-P | Field mustard | endoplasmic reticulum | 70.84 | 70.66 |
| CDY55344 | Canola | endoplasmic reticulum | 70.84 | 70.66 |
| CDY30236 | Canola | endoplasmic reticulum | 70.84 | 70.66 |
| CDY19035 | Canola | endoplasmic reticulum | 70.33 | 70.15 |
| CDY14372 | Canola | endoplasmic reticulum | 71.1 | 70.03 |
| Solyc08g083020.2.1 | Tomato | plastid | 64.19 | 69.92 |
| Bra003048.1-P | Field mustard | endoplasmic reticulum | 70.59 | 69.52 |
| CDY20251 | Canola | endoplasmic reticulum | 71.1 | 69.15 |
| CDY38752 | Canola | endoplasmic reticulum | 67.01 | 67.88 |
| AT5G53540.1 | Thale cress | endoplasmic reticulum | 69.82 | 67.74 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 64.96 | 65.3 |
| Bra029063.1-P | Field mustard | endoplasmic reticulum | 64.71 | 64.71 |
| Zm00001d029385_P001 | Maize | cytosol | 21.99 | 45.03 |
| Zm00001d049686_P001 | Maize | plastid | 24.04 | 39.33 |
| VIT_16s0098g01260.t01 | Wine grape | endoplasmic reticulum | 73.4 | 37.18 |
| Zm00001d043410_P002 | Maize | cytosol | 29.92 | 28.19 |
| Zm00001d039904_P006 | Maize | cytosol | 26.6 | 23.91 |
| Zm00001d045483_P002 | Maize | cytosol | 29.92 | 23.49 |
| Zm00001d008596_P005 | Maize | cytosol | 26.85 | 23.08 |
| Zm00001d011563_P019 | Maize | mitochondrion | 29.16 | 21.71 |
| Zm00001d011611_P005 | Maize | cytosol | 27.37 | 20.74 |
| Zm00001d009702_P001 | Maize | endoplasmic reticulum | 40.15 | 18.62 |
| Zm00001d008983_P001 | Maize | vacuole | 39.39 | 18.2 |
| Zm00001d039315_P003 | Maize | vacuole | 39.13 | 18.19 |
| Zm00001d041083_P005 | Maize | nucleus | 29.92 | 17.26 |
| Zm00001d007139_P007 | Maize | cytosol, plastid | 40.92 | 15.14 |
| Zm00001d052248_P009 | Maize | mitochondrion | 37.34 | 14.79 |
| Zm00001d047494_P007 | Maize | cytosol | 40.92 | 14.47 |
| Zm00001d029120_P004 | Maize | cytosol | 41.18 | 14.3 |
| Zm00001d048689_P004 | Maize | plastid | 42.46 | 13.24 |
| Zm00001d007698_P002 | Maize | plastid | 42.46 | 13.11 |
| Zm00001d043841_P003 | Maize | cytosol | 27.11 | 11.73 |
Protein Annotations
| Gene3D:1.10.8.60 | EntrezGene:100283830 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | ProteinID:AQK67161.1 |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:BT068090 | UniProt:C0PIH1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PFscan:PS51257 | PANTHER:PTHR23074 |
| PANTHER:PTHR23074:SF20 | SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI000195CE3F | EnsemblPlantsGene:Zm00001d014775 |
| EnsemblPlants:Zm00001d014775_P002 | EnsemblPlants:Zm00001d014775_T002 | SEG:seg | : | : | : |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Coordinates
chr5:+:62827826..62832867
Molecular Weight (calculated)
43578.4 Da
IEP (calculated)
6.544
GRAVY (calculated)
-0.241
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSEASSRL VQELVLYAAS AALSCLVLFA GLRHLDPNRA ASQKAQQQKK EIAKRLGRPL VSTTPYEDVI ACDVINPDSI DVEFDSIGGL DQIKQALYEL
101: VILPLRRPEL FTFGKLLSPQ KGVLLYGPPG TGKTMLAKAI ARESGAVFIN VRISNLMSKW FGDAQKLVAA VFSLAHKLQP AIIFIDEVDS FLGQRRTTDH
201: EAMTNMKTEF MSLWDGFTTD QNARVMVLAA TNRPSELDEA ILRRFTQIFE IGIPVESERS KILQVVLKGE NVEHNIDYDR IASLCEGFTG SDILELCKQA
301: AFYPIRELLD DEKKGRKLDK PRPLRQSDLE RALSVSRKGK KAASSALQSP LWVRPTDSED DQVQNAIFEI SKLMSRIVQN SESEPQEPSS P
101: VILPLRRPEL FTFGKLLSPQ KGVLLYGPPG TGKTMLAKAI ARESGAVFIN VRISNLMSKW FGDAQKLVAA VFSLAHKLQP AIIFIDEVDS FLGQRRTTDH
201: EAMTNMKTEF MSLWDGFTTD QNARVMVLAA TNRPSELDEA ILRRFTQIFE IGIPVESERS KILQVVLKGE NVEHNIDYDR IASLCEGFTG SDILELCKQA
301: AFYPIRELLD DEKKGRKLDK PRPLRQSDLE RALSVSRKGK KAASSALQSP LWVRPTDSED DQVQNAIFEI SKLMSRIVQN SESEPQEPSS P
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.