Factsheet for Solyc08g083020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031598	Potato	endoplasmic reticulum	97.49	97.49
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	68.25	65.86
TraesCS7A01G384900.1	Wheat	endoplasmic reticulum	68.25	65.68
TraesCS7B01G287800.1	Wheat	golgi	67.97	65.42
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	71.03	65.05
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	68.25	64.99
Zm00001d014775_P002	Maize	plastid	69.92	64.19
KXG20883	Sorghum	endoplasmic reticulum	68.8	63.17
GSMUA_Achr11P...	Banana	endoplasmic reticulum	68.25	63.14
Os06t0714500-01	Rice	plasma membrane	68.25	62.34
HORVU0Hr1G021880.1	Barley	endoplasmic reticulum	67.97	61.93
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	66.85	61.86
HORVU7Hr1G091480.2	Barley	plastid	66.85	55.56
Zm00001d036410_P002	Maize	plastid	67.41	50.84
Solyc11g013570.1.1	Tomato	cytosol	23.12	27.39
Solyc02g070440.2.1	Tomato	cytosol	27.86	25.91
Solyc11g007170.1.1	Tomato	cytosol	28.41	25.25
Solyc11g067240.1.1	Tomato	plastid	28.13	23.38
Solyc11g067230.1.1	Tomato	cytosol	28.13	23.38
Solyc11g013700.1.1	Tomato	cytosol	24.51	22.22
Solyc01g094150.2.1	Tomato	nucleus	29.8	21.79
Solyc11g013650.1.1	Tomato	cytosol	20.33	20.74
Solyc06g066810.2.1	Tomato	cytosol	29.25	20.27
Solyc10g019190.1.1	Tomato	cytosol	19.22	19.44
Solyc11g050800.1.1	Tomato	cytosol	16.71	19.05
Solyc06g071980.2.1	Tomato	cytosol	39.83	18.82
Solyc08g081740.2.1	Tomato	unclear	42.62	18.3
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	42.06	18.28
Solyc11g050880.1.1	Tomato	cytosol	23.96	17.03
Solyc12g040520.1.1	Tomato	cytosol	24.51	16.57
Solyc02g094100.2.1	Tomato	nucleus	30.08	16.17
Solyc06g072000.1.1	Tomato	plastid	40.95	14.31
Solyc02g014350.2.1	Tomato	mitochondrion	39.55	14.24
Solyc03g110900.2.1	Tomato	nucleus	43.73	13.14
Solyc09g074950.2.1	Tomato	plastid	42.9	12.45
Solyc06g084530.2.1	Tomato	extracellular, nucleus	43.18	12.39

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	UniProt:K4CPU8	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074
PANTHER:PTHR23074:SF20	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g083020.2	EnsemblPlants:Solyc08g083020.2.1	TMHMM:TMhelix
UniParc:UPI000276CADA	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:65618688..65621084

Molecular Weight (calculated)

39645.0 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.139

Length

359 amino acids

Sequence
(BLAST)

001: MAGSSSGKLI QDLILCAASA ALSMAVFFVG LRHLDPNREA SKKAIESRKH LSKRLGRTLI YTTPYEDMIT GDVVNPDHID VEFDSIGGLD GIKETLFQLA
101: ILPLRRPELF CHGKLLGPMK GVLLYGPPGT GKTMLAKAIA KESGAVFINV KVSTLMSKWF GDAQKLVAAV FSLAYKLQPA IIFIDEVDSF LGQRRSTENE
201: MLTSMKTEFM ALWDGFTTDQ NARVMVLAAT NRPSDLDEAI IRRFSQACEI GKPSLSDRTK ILKVVLKGER IEDNIDFDRL AGLCEGYTGS DILEACKQAA
301: FIPLGEYLQD EKKAEQSQAP RPLSQSDIER AVAESKRTRV SAKKPTIVSF RLDDYEDLD

Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)

001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR

Arabidopsis Description

26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.