Factsheet for Solyc06g066810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042654	Potato	cytosol	98.26	98.26
AT1G80350.1	Thale cress	cytosol	85.14	84.32
VIT_09s0002g05260.t01	Wine grape	cytosol	84.56	84.07
CDY37590	Canola	cytosol	82.24	83.37
CDY38662	Canola	cytosol	82.24	82.56
Bra008479.1-P	Field mustard	cytosol	83.59	82.01
CDX79393	Canola	cytosol	83.2	81.47
CDY57698	Canola	cytosol	83.2	81.17
Bra003561.1-P	Field mustard	cytosol	83.01	80.98
KRH47511	Soybean	cytosol	83.01	80.98
KRH44395	Soybean	cytosol	83.2	80.86
Os01t0683100-01	Rice	extracellular	80.69	80.54
Zm00001d011611_P005	Maize	cytosol	79.92	80.23
EES01274	Sorghum	cytosol	80.31	80.15
KRH09800	Soybean	cytosol	72.78	78.87
TraesCS3D01G265900.1	Wheat	cytosol	79.15	78.69
TraesCS3B01G299100.1	Wheat	cytosol	79.15	78.69
TraesCS3A01G265700.1	Wheat	cytosol	78.96	78.5
HORVU3Hr1G063300.1	Barley	cytosol	78.76	78.31
GSMUA_Achr4P00810_001	Banana	cytosol	79.73	67.59
KXG19781	Sorghum	cytosol	68.92	67.11
Solyc11g013570.1.1	Tomato	cytosol	39.19	67.0
Solyc11g050800.1.1	Tomato	cytosol	33.59	55.24
Solyc11g013700.1.1	Tomato	cytosol	40.73	53.28
Solyc11g013650.1.1	Tomato	cytosol	35.52	52.27
Solyc10g019190.1.1	Tomato	cytosol	32.63	47.61
Solyc11g050880.1.1	Tomato	cytosol	44.98	46.14
Zm00001d043841_P003	Maize	cytosol	80.5	46.13
Solyc12g040520.1.1	Tomato	cytosol	45.95	44.82
Solyc02g070440.2.1	Tomato	cytosol	30.7	41.19
Solyc11g007170.1.1	Tomato	cytosol	29.92	38.37
Solyc11g067230.1.1	Tomato	cytosol	30.5	36.57
Solyc11g067240.1.1	Tomato	plastid	30.31	36.34
Solyc01g094150.2.1	Tomato	nucleus	29.92	31.57
Solyc08g083020.2.1	Tomato	plastid	20.27	29.25
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	21.24	29.18
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	20.46	27.04
Solyc02g094100.2.1	Tomato	nucleus	30.7	23.8
Solyc08g081740.2.1	Tomato	unclear	29.54	18.3
Solyc06g071980.2.1	Tomato	cytosol	26.83	18.29
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	26.06	16.34
Solyc06g072000.1.1	Tomato	plastid	27.22	13.73
Solyc02g014350.2.1	Tomato	mitochondrion	25.48	13.24
Solyc03g110900.2.1	Tomato	nucleus	29.34	12.72
Solyc09g074950.2.1	Tomato	plastid	28.38	11.88
Solyc06g084530.2.1	Tomato	extracellular, nucleus	27.61	11.43

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0000226	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568
GO:GO:0009653	GO:GO:0009825	GO:GO:0009832	GO:GO:0009987	GO:GO:0010091	GO:GO:0016043
GO:GO:0016049	GO:GO:0016787	GO:GO:0016887	GO:GO:0030154	GO:GO:0040007	GO:GO:0043622
GO:GO:0051013	UniProt:K4C7V5	InterPro:KATNA1	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc06g066810.2	EnsemblPlants:Solyc06g066810.2.1	UniParc:UPI0002765F83	InterPro:Vps4_C	SEG:seg	:

Description

Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:K4C7V5]

Coordinates

chr6:-:41989145..41995650

Molecular Weight (calculated)

56806.3 Da

IEP (calculated)

7.861

GRAVY (calculated)

-0.548

Length

518 amino acids

Sequence
(BLAST)

001: MVGASLAGLQ DHLKLAREYA VEGLYDTSVI FFDGAIAQIN KHVNTLDDPL IRSKWMNVKK AISEETEVVK QLDAEKRSFK EVPMGRRPNS PPISTKSSFV
101: FQPLDEYPTS SGAPMDDPDV WRPPSRDTTR RPGRAGQGGM RKSPQDGAWA RASTTRTGTT IRGGRTSGST KAGTGVRSST TGKKAPGKSA KSDSTDGEPE
201: EGKSKKGQYE GPDADLAAML ERDVLDNSPG VRWDDVAGLS EAKRLLEEAV VLPLWMPEYF QGIRRPWKGV LMFGPPGTGK TLLAKAVATE CGTTFFNVSS
301: ATLASKWRGE SERMVRCLFD LARSYAPSTI FIDEIDSLCN ARGGSGEHES SRRVKSELLV QVDGVSNSAT NEDGTRKIVM VLAATNFPWD IDEALRRRLE
401: KRIYIPLPNF ESRKELIKIN LKSIEVAADV DIDEVARKTE GYSGDDLTNV CRDASMNGMR RKIAGKTREE IKNMAKDDIA KDPVAMCDFV EAISKVQPSV
501: SAADIEKHEK WMAEFGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.