Factsheet for VIT_09s0002g05260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47511	Soybean	cytosol	88.48	86.82
KRH44395	Soybean	cytosol	88.29	86.3
AT1G80350.1	Thale cress	cytosol	85.41	85.09
Solyc06g066810.2.1	Tomato	cytosol	84.07	84.56
PGSC0003DMT400042654	Potato	cytosol	83.88	84.36
CDY37590	Canola	cytosol	81.19	82.78
KRH09800	Soybean	cytosol	75.82	82.64
CDY38662	Canola	cytosol	81.57	82.36
Os01t0683100-01	Rice	extracellular	81.57	81.89
CDX79393	Canola	cytosol	82.92	81.66
Bra003561.1-P	Field mustard	cytosol	82.73	81.17
CDY57698	Canola	cytosol	82.73	81.17
Bra008479.1-P	Field mustard	cytosol	82.15	81.06
EES01274	Sorghum	cytosol	80.42	80.73
TraesCS3B01G299100.1	Wheat	cytosol	80.61	80.61
TraesCS3D01G265900.1	Wheat	cytosol	80.61	80.61
TraesCS3A01G265700.1	Wheat	cytosol	80.42	80.42
Zm00001d011611_P005	Maize	cytosol	79.27	80.04
HORVU3Hr1G063300.1	Barley	cytosol	80.04	80.04
GSMUA_Achr4P00810_001	Banana	cytosol	83.3	71.03
KXG19781	Sorghum	cytosol	68.91	67.48
Zm00001d043841_P003	Maize	cytosol	79.85	46.02
VIT_10s0003g03500.t01	Wine grape	cytosol	31.29	41.06
VIT_06s0080g00160.t01	Wine grape	extracellular	29.56	35.57
VIT_13s0106g00490.t01	Wine grape	cytosol	29.37	35.25
VIT_15s0048g01720.t01	Wine grape	cytosol	28.79	30.55
VIT_14s0068g02130.t01	Wine grape	nucleus	31.67	24.7
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	27.45	17.81
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	26.49	17.65
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	27.64	17.2
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	27.26	16.99
VIT_16s0098g01260.t01	Wine grape	endoplasmic reticulum	21.31	14.38
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	25.72	13.4
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	28.79	12.34
VIT_07s0005g00200.t01	Wine grape	plastid	28.98	11.73

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100242880	wikigene:100242880	EntrezGene:109123232	MapMan:13.4.4.2.1
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:AM434041	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CAN76004
ProteinID:CAN76004.1	ProteinID:CBI36200	ProteinID:CBI36200.3	UniProt:D7U0Q4	EMBL:FN596494	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016887	GO:GO:0051013	InterPro:KATNA1	EntrezGene:LOC100242880	wikigene:LOC100242880	HAMAP:MF_03023
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00019840D0	ArrayExpress:VIT_09s0002g05260	EnsemblPlantsGene:VIT_09s0002g05260	EnsemblPlants:VIT_09s0002g05260.t01
InterPro:Vps4_C	unigene:Vvi.17220	RefSeq:XP_002284961	RefSeq:XP_002284961.1	RefSeq:XP_019077955.1	SEG:seg

Description

Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:D7U0Q4]

Coordinates

chr9:+:4959059..4964103

Molecular Weight (calculated)

57494.8 Da

IEP (calculated)

7.879

GRAVY (calculated)

-0.603

Length

521 amino acids

Sequence
(BLAST)

001: MVGPSTLVGL QDHLKLAREY ALEGLYDTSI IFFDGAIAQI NKHLNTLDDP LIRTKWMNVK KALSEETEVV KQLDAERRAF KEIPGGRRPS SPPISTKSSF
101: VFQPLDEYPT SSGAPMDDPD VWRPPSRDTT SRRSARSGQV GMRKTSQDGT WPRGSTRGGA APRGGKSGAS SRTHSGVRAS TTGRKGSSKS NTDKADSANG
201: DAEDGKSKRA QYEGPDPDLA AMLERDVLET SPGVRWDDVA GLSEAKRLLE EAVVLPLWMP EYFQGIRRPW KGVLMFGPPG TGKTLLAKAV ATECGTTFFN
301: VSSATLASKW RGESERMVRC LFDLARAYAP STIFIDEIDS LCNARGASGE HESSRRVKSE LLVQVDGVNN SSTGEDGSRK IVMVLAATNF PWDIDEALRR
401: RLEKRIYIPL PNFESRKELI RINLKTVEVA PDVNIDEVAR RTEGYSGDDL TNVCRDASLN GMRRKIAGKT RDEIKNMPKD EISNDPVAMC DFEEAITKVQ
501: RSVSQADIER HEKWFSEFGS A

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.