CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47511	Soybean	cytosol	97.56	97.93
KRH23518	Soybean	cytosol	38.65	89.96
VIT_09s0002g05260.t01	Wine grape	cytosol	86.3	88.29
AT1G80350.1	Thale cress	cytosol	82.93	84.51
KRH09800	Soybean	cytosol	75.61	84.31
PGSC0003DMT400042654	Potato	cytosol	81.05	83.4
Solyc06g066810.2.1	Tomato	cytosol	80.86	83.2
CDY37590	Canola	cytosol	78.99	82.39
CDY38662	Canola	cytosol	78.99	81.59
Os01t0683100-01	Rice	extracellular	79.17	81.31
CDX79393	Canola	cytosol	80.3	80.91
Bra008479.1-P	Field mustard	cytosol	79.74	80.49
EES01274	Sorghum	cytosol	78.05	80.15
TraesCS3D01G265900.1	Wheat	cytosol	78.24	80.04
TraesCS3B01G299100.1	Wheat	cytosol	78.24	80.04
TraesCS3A01G265700.1	Wheat	cytosol	78.24	80.04
Bra003561.1-P	Field mustard	cytosol	79.74	80.04
CDY57698	Canola	cytosol	79.74	80.04
HORVU3Hr1G063300.1	Barley	cytosol	77.67	79.46
Zm00001d011611_P005	Maize	cytosol	76.92	79.46
GSMUA_Achr4P00810_001	Banana	cytosol	79.92	69.72
KXG19781	Sorghum	cytosol	67.17	67.29
Zm00001d043841_P003	Maize	cytosol	77.49	45.69
KRH58481	Soybean	cytosol	29.27	38.71
KRH42362	Soybean	cytosol, endoplasmic reticulum	29.08	38.27
KRH08796	Soybean	cytosol	12.38	37.93
KRH26619	Soybean	nucleus	29.83	36.47
KRH30451	Soybean	cytosol	29.64	36.41
KRH25197	Soybean	cytosol	29.46	36.18
KRH22691	Soybean	cytosol	26.45	34.47
KRH00594	Soybean	cytosol, plastid	27.2	29.53
KRH40573	Soybean	cytosol, plastid	26.83	29.42
KRH08789	Soybean	cytosol	17.64	28.06
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	20.45	27.81
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	20.07	27.3
KRH15897	Soybean	endoplasmic reticulum	19.89	27.18
KRH57680	Soybean	nucleus	31.52	25.49
KRG94255	Soybean	nucleus	30.96	25.04
KRH57222	Soybean	cytosol	26.08	22.17
KRH08780	Soybean	extracellular, plasma membrane	26.08	17.01
KRH38312	Soybean	endoplasmic reticulum	26.08	17.01
KRH27876	Soybean	cytosol	26.08	16.57
KRH35220	Soybean	endoplasmic reticulum	25.14	16.56
KRH77598	Soybean	endoplasmic reticulum	25.7	16.33
KRH59989	Soybean	endoplasmic reticulum	25.7	16.31
KRH41256	Soybean	extracellular	25.89	16.18
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	24.77	16.1
KRH71559	Soybean	cytosol	28.14	13.56
KRH31896	Soybean	nucleus	28.89	12.56
KRH24190	Soybean	mitochondrion	24.39	12.51
KRH29161	Soybean	cytosol, mitochondrion	24.2	12.43
KRH31895	Soybean	nucleus	28.52	12.19
KRH54195	Soybean	plastid	28.14	12.12
KRH63756	Soybean	cytosol, plastid	27.95	12.07
KRH71560	Soybean	nucleus	28.14	12.07
KRH03951	Soybean	nucleus	27.58	12.01

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100820625	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02004928	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G208100	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016887	GO:GO:0051013	UniProt:I1KV99	InterPro:KATNA1	EnsemblPlants:KRH44395	ProteinID:KRH44395
ProteinID:KRH44395.1	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002338E08	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:16853819..16858017

Molecular Weight (calculated)

58169.6 Da

IEP (calculated)

8.870

GRAVY (calculated)

-0.532

Length

533 amino acids

Sequence
(BLAST)

001: MVGGSLAGLQ EHLKLARDYA LEGLYDTSII FFDGALAQIN KHLSTVEDPL IRAKWMNVKK ALSEETEVVK QLDAERRAFK DNPIGRRPSS PPISVKSSSS
101: FVFQPLDEYP TSSSGPGPVD DPDVWRPPSR DTTSRRPARP GQVGARKSAQ DGAWARGATA RTGAAGRGAK AGATGRVNSG TRASTTTGKK GGAASSGKAS
201: KTDTAAAAVT NGDAEDGKSK KLQYEGPDPE LAAMLERDVL ETSPGVRWDD VAGLTEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK
301: AVATECGTTF FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGAS GEHESSRRVK SELLVQVDGV SNSATNEDGS RKIVMVLAAT
401: NFPWDIDEAL RRRLEKRIYI PLPNFESRKE LIRINLKTVE VAPDVNIDEV ARRTEGYSGD DLTNVCRDAS LNGMRRKIAG KTRDEIKNMS KDDISKDPVA
501: KCDFEEALRK VQRSVSQADI ERHEKWFTEF GSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.