CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71559	Soybean	cytosol	85.48	94.76
KRH71560	Soybean	nucleus	85.56	84.39
Os11t0661400-01	Rice	cytosol	16.56	84.23
KRH31895	Soybean	nucleus	84.75	83.32
Zm00001d029385_P001	Maize	cytosol	12.56	80.63
KRH57222	Soybean	cytosol	38.5	75.28
Zm00001d049686_P001	Maize	plastid	13.87	71.13
Solyc06g084530.2.1	Tomato	extracellular, nucleus	67.54	66.19
Solyc09g074950.2.1	Tomato	plastid	66.48	65.89
VIT_07s0005g00200.t01	Wine grape	plastid	69.09	65.81
TraesCS1B01G120800.1	Wheat	cytosol	13.54	65.61
GSMUA_Achr11P...	Banana	cytosol	37.52	65.25
GSMUA_Achr8P33760_001	Banana	cytosol	58.08	64.49
CDX91317	Canola	plastid	55.63	64.46
CDX90936	Canola	plastid	56.69	63.53
CDY32485	Canola	plastid	56.93	63.34
CDX97266	Canola	plastid	57.5	62.33
CDY50381	Canola	plastid	60.52	61.78
CDY18129	Canola	cytosol, plastid	61.17	61.78
CDX89933	Canola	plastid	58.24	61.76
Bra018548.1-P	Field mustard	plastid	61.01	61.36
CDY22053	Canola	plastid	61.26	61.11
Os03t0344700-01	Rice	cytosol	38.58	61.03
Bra000878.1-P	Field mustard	plastid	62.15	60.86
HORVU7Hr1G026880.14	Barley	cytosol	23.08	60.86
GSMUA_Achr3P00740_001	Banana	mitochondrion	56.93	60.85
Bra032579.1-P	Field mustard	plastid	56.69	60.59
KRH08796	Soybean	cytosol	8.56	60.34
AT1G02890.1	Thale cress	plastid	61.17	60.19
GSMUA_Achr11P...	Banana	cytosol	43.96	59.96
AT4G02480.1	Thale cress	plastid	61.83	59.92
Bra036265.1-P	Field mustard	plastid	62.48	59.38
GSMUA_Achr8P10090_001	Banana	cytosol	52.12	58.79
CDY18018	Canola	plastid	58.4	58.69
KXG29076	Sorghum	plastid	56.44	56.03
KRH03951	Soybean	nucleus	55.14	55.23
KRH63756	Soybean	cytosol, plastid	54.98	54.62
Zm00001d007698_P002	Maize	plastid	56.28	54.5
HORVU2Hr1G019730.5	Barley	cytosol, plastid	46.66	54.48
KRH54195	Soybean	plastid	54.89	54.36
Zm00001d048689_P004	Maize	plastid	55.55	54.31
Os07t0672500-02	Rice	cytosol, plastid	47.47	53.84
TraesCS4A01G169300.15	Wheat	plastid	54.08	53.77
TraesCS7B01G028300.1	Wheat	cytosol	34.58	53.74
EES16128	Sorghum	cytosol, plastid	40.54	53.33
Zm00001d007139_P007	Maize	cytosol, plastid	45.92	53.26
TraesCS4D01G145100.12	Wheat	plastid	53.18	53.09
TraesCS2A01G113900.1	Wheat	cytosol	47.55	52.95
TraesCS4B01G126300.7	Wheat	nucleus	54.32	52.94
OQU90457	Sorghum	cytosol, plastid	46.9	52.56
TraesCS2B01G132900.3	Wheat	cytosol, plastid	47.15	52.55
TraesCS4A01G142800.3	Wheat	cytosol	46.9	52.32
TraesCS4D01G168600.1	Wheat	cytosol	47.06	52.12
TraesCS4B01G155600.1	Wheat	cytosol	46.66	52.0
HORVU4Hr1G033300.1	Barley	cytosol	54.49	51.58
TraesCS2D01G114500.1	Wheat	cytosol, plastid	47.55	51.41
Bra033356.1-P	Field mustard	cytosol, plastid	61.34	50.44
EER92288	Sorghum	cytosol	45.27	50.0
HORVU4Hr1G046420.6	Barley	cytosol, plastid	46.33	49.18
Zm00001d047494_P007	Maize	cytosol	44.21	49.01
Zm00001d029120_P004	Maize	cytosol	44.78	48.76
TraesCS7D01G127200.1	Wheat	cytosol	38.99	48.38
TraesCS7A01G128400.2	Wheat	cytosol, plastid	39.64	47.93
KRH08789	Soybean	cytosol	12.89	47.16
OQU79278	Sorghum	cytosol, plastid	35.24	46.85
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	14.03	43.88
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	13.87	43.37
KRH15897	Soybean	endoplasmic reticulum	13.21	41.54
KRH08780	Soybean	extracellular, plasma membrane	27.57	41.37
KRH38312	Soybean	endoplasmic reticulum	27.49	41.25
KRH35220	Soybean	endoplasmic reticulum	26.43	40.05
KRH27876	Soybean	cytosol	27.24	39.81
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	26.59	39.76
KRH77598	Soybean	endoplasmic reticulum	27.16	39.69
KRH23518	Soybean	cytosol	7.26	38.86
KRH59989	Soybean	endoplasmic reticulum	26.59	38.81
KRH41256	Soybean	extracellular	27.0	38.8
KRH58481	Soybean	cytosol	11.26	34.24
KRH42362	Soybean	cytosol, endoplasmic reticulum	11.09	33.58
KRH24190	Soybean	mitochondrion	27.57	32.53
KRH29161	Soybean	cytosol, mitochondrion	27.41	32.37
KRH09800	Soybean	cytosol	11.66	29.92
KRH30451	Soybean	cytosol	10.28	29.03
KRH44395	Soybean	cytosol	12.56	28.89
KRH47511	Soybean	cytosol	12.48	28.81
KRH25197	Soybean	cytosol	10.2	28.8
KRH26619	Soybean	nucleus	10.11	28.44
KRH00594	Soybean	cytosol, plastid	11.34	28.31
KRH40573	Soybean	cytosol, plastid	11.09	27.98
KRG94255	Soybean	nucleus	14.27	26.56
KRH57680	Soybean	nucleus	14.27	26.56
KRH22691	Soybean	cytosol	8.65	25.92
CDX89934	Canola	cytosol	0.33	1.53

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100794406	Gene3D:2.60.200.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase
EMBL:ACUP02006088	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	InterPro:FHA_dom	EnsemblPlantsGene:GLYMA_10G019400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887
InterPro:IPR000253	UniProt:K7LGX4	EnsemblPlants:KRH31896	ProteinID:KRH31896	ProteinID:KRH31896.1	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF70	SMART:SM00382	InterPro:SMAD_FHA_dom_sf
SUPFAM:SSF49879	SUPFAM:SSF52540	UniParc:UPI00029631C7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:1681918..1697471

Molecular Weight (calculated)

133132.0 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.279

Length

1226 amino acids

Sequence
(BLAST)

0001: MVETRRGASS SKRSLSSPSS ASNTKRSKVS EDSSVAAPVN ESGTGNESGE PELRPSDLPD TASLKVAGVC DKSPSEGEAL VPPLCAGETA EKSKVAGLPP
0101: RSVKKRAAKS CPKTAWGKLL SQCSKTPHVC MTEPFFTVGQ GRHCNLWLKD PTIGSVLCKL SHIERGGSSG ALLEITGGKG SIHVNGKTYR KNARLILSGG
0201: DEVVFGSSAK YAYIFQQLSN SNISTADIAS SVSILEAQSA PLNGMQVEAR SGDPSAVAGA SILASLSNNI CKELSLLPPA AKTGKNVQNT DISSLHSGCG
0301: DDIPDNEMND TTNNAEPAGD FSADKTVLAS STTVNENPNL DSVEVDTNID ANVGKMTAAA YELRPLLRML TGSCPEFDLS GSISKILEGR RELRELLKDV
0401: DTPTVLASTK REAFKDILQQ RILIAEKIDV SFETFPYYLS DTTKNVLIAS TFIHLKCNGF GKYASDLPSV SPRILLSGPA GSEIYQETLS KALVKHFGAR
0501: LLIVDSLSLP GGSPSKEVDS AKESYCAEKP SVFSRKKNLH TAMLQHKKPA SSVNAEIIGG PMLISSASSK GTTLKKGDRV KFIGSFPSAV SSLPNYISRG
0601: PSYGSRGKVL LAFEDNGSSK IGVRFDKSIP DGNDLGGLCE DDRGFFCSAN HLLRVDGSGG DDLDKVAINE IFEVVSNQSK SGALVLFIKD IEKAMIGNYE
0701: ILKSKFESLP PNVVVVGSHT QLDNRKEKTQ PGSLLFTKFG SNQTALLDLA FPDNFSRLHD RSKEISKVMK QLSRLFPNKV TIQLPQDEAL LSDWKQQLDC
0801: DIETMKAQSN VVSIRLVLGR IGLDCPDLET LCIKDHTLTT ESVEKIIGWA ISYHFMHSSE ASIRDSKLVI SAESIKYGHN ILQGIQNENK NMKKSLKDVV
0901: TENEFEKKLL TDVIPPTDIG VTFDDIGALE NVKETLKELV MLPLQRPELF GKGQLAKPCK GILLFGPPGT GKTMLAKAVA TEAGANFINI SMSSITSKWF
1001: GEGEKYVKAV FSLASKIAPS VIFVDEVDSM LGRRENPGEH EAMRKMKNEF MVNWDGLRTK DKERILVLAA TNRPFDLDEA VIRRLPRRLM VNLPDAPNRE
1101: KIVSVILAKE ELAPDVDFEA IANMTDGYSG SDLKNLCVTA AHCPIREILE KEKKERSLAL TENQPLPQLC SSTDIRPLKM EDFIYAHEQV CVSVSSESTN
1201: MNELLQWNDL YGEGGSRKMR SLSYFM

Best Arabidopsis Sequence Match ( AT4G02480.1 )
(BLAST)

0001: MVETRRSSSA SKRFCASSSS PEASSSQRPN KRSKVKIDAA ASSLEPATAE PAGSSSASEV PIENQGPASD PGSESGEPEL GSSDPQAMDA EKPVVTTDVP
0101: VMENSPETDA NPEVEVLATP TVAGEAVADA DKSKAAKKRA LKAPWAKLLS QYSQNPHRVI RGPVFTVGRR GCDLSIRDQA MPSTLCELKQ SEHGGPSVAS
0201: LEILGNGVIV HVNGKCYQKS TCVHLRGGDE VIFSLNGKHA YIFQPVKDEN LAAPDRASSL SICEARGAPL KGVHVETRAG DVDGASDVDG ASILASLSKL
0301: RSFHLLPPIA KAGKRQQNPA VPVVPSSFND CISDTDMNDA DSNNDHAAVA SVEKIAAAST PGTANENLNV DGSGLDPFQE ADGGNVPAAG YEIRPIVHLL
0401: GESSSFDIRG SISRLLDERR EVKEFLREFD LSSTISTRRQ AFKDSLRGGV LNAQNIDISF ENFPYYLSAT TKGVLMISMY VHMNGGSKYA NFATDLTTAC
0501: PRILLSGPSG SEIYQEMLAK ALAKQFGAKL MIVDSLLLPG GSPAREAESS KEGSRRERLS MLAKRAVQAA QVLQHKKPTS SVDADITGGS TLSSQALPKQ
0601: EVSTATSKSY TFKAGDRVKF VGPSASAISS LQGQLRGPAI GSQGKVALAF EDNCASKIGI RFDRPVQDGN DLGGLCEEDH GFFCAASSLR LEGSSSDDAD
0701: KLAVNEIFEV ALSESEGGSL ILFLKDIEKS LVGNSDVYAT LKSKLETLPE NIVVIASQTQ LDSRKEKSHP GGFLFTKFGG NQTALLDLAF PDNFGKLHDR
0801: SKETPKSMKQ ITRLFPNKIA IQLPQEEALL SDWKEKLDRD TEILKVQANI TSILAVLAKN KLDCPDLGTL CIKDQTLPSE SVEKVVGWAF GHHLMICTEP
0901: IVKDNKLVIS AESISYGLQT LHDIQNENKS LKKSLKDVVT ENEFEKKLLS DVIPPSDIGV SFDDIGALEN VKETLKELVM LPLQRPELFD KGQLTKPTKG
1001: ILLFGPPGTG KTMLAKAVAT EAGANFINIS MSSITSKWFG EGEKYVKAVF SLASKIAPSV IFVDEVDSML GRRENPGEHE AMRKMKNEFM VNWDGLRTKD
1101: RERVLVLAAT NRPFDLDEAV IRRLPRRLMV NLPDATNRSK ILSVILAKEE IAPDVDLEAI ANMTDGYSGS DLKNLCVTAA HFPIREILEK EKKEKTAAQA
1201: ENRPTPPLYS CTDVRSLTMN DFKAAHDQVC ASVSSDSSNM NELQQWNELY GEGGSRKKTS LSYFM

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WM93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.