CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29161	Soybean	cytosol, mitochondrion	95.77	95.86
Os02t0749150-01	Rice	mitochondrion	21.85	84.7
Os06t0225900-01	Rice	cytosol	29.55	83.65
HORVU6Hr1G038660.1	Barley	cytosol, mitochondrion	13.38	78.09
HORVU4Hr1G059020.1	Barley	cytosol, endoplasmic reticulum	16.75	72.2
HORVU4Hr1G059040.2	Barley	cytosol	17.32	71.43
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	68.24	70.9
HORVU3Hr1G072480.2	Barley	cytosol	16.65	68.65
Solyc02g014350.2.1	Tomato	mitochondrion	64.77	67.5
HORVU5Hr1G104980.1	Barley	endoplasmic reticulum, mitochondrion	18.38	66.78
CDY24618	Canola	endoplasmic reticulum	18.0	66.55
AT3G19740.1	Thale cress	cytosol, mitochondrion, plastid	63.14	66.06
Bra038230.1-P	Field mustard	cytosol, mitochondrion, plastid	61.31	64.21
AT1G50140.1	Thale cress	mitochondrion	61.89	64.11
CDY45052	Canola	mitochondrion	60.73	63.16
Bra014239.1-P	Field mustard	mitochondrion	60.73	63.16
CDY33415	Canola	cytosol, mitochondrion	61.6	62.99
CDY03591	Canola	cytosol, mitochondrion, plastid	60.35	62.76
CDY42204	Canola	cytosol, mitochondrion, plastid	61.6	61.48
OQU76102	Sorghum	mitochondrion	57.17	61.36
GSMUA_Achr7P07310_001	Banana	mitochondrion	61.89	61.3
EES05524	Sorghum	plastid	58.13	61.2
Zm00001d052248_P009	Maize	mitochondrion	57.84	60.89
TraesCS6D01G284600.1	Wheat	mitochondrion	57.36	60.63
TraesCS6B01G333700.1	Wheat	mitochondrion	56.88	60.37
TraesCS6A01G305500.1	Wheat	mitochondrion	56.98	60.22
HORVU6Hr1G075440.6	Barley	mitochondrion	56.69	59.74
TraesCS7D01G186200.1	Wheat	mitochondrion	55.53	59.36
TraesCS7A01G184700.1	Wheat	mitochondrion	55.44	59.32
TraesCS7B01G089500.1	Wheat	mitochondrion	55.05	58.79
HORVU7Hr1G037870.1	Barley	plastid	55.63	55.63
KRH08796	Soybean	cytosol	9.24	55.17
KRH57222	Soybean	cytosol	24.93	41.31
KRH08789	Soybean	cytosol	13.28	41.19
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	15.21	40.31
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	15.11	40.05
KRH15897	Soybean	endoplasmic reticulum	14.82	39.49
KRH23518	Soybean	cytosol	8.28	37.55
KRH38312	Soybean	endoplasmic reticulum	26.56	33.78
KRH08780	Soybean	extracellular, plasma membrane	26.47	33.66
KRH77598	Soybean	endoplasmic reticulum	26.95	33.37
KRH35220	Soybean	endoplasmic reticulum	25.79	33.13
KRH27876	Soybean	cytosol	26.66	33.02
KRH59989	Soybean	endoplasmic reticulum	26.66	32.98
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	25.89	32.8
KRH41256	Soybean	extracellular	26.56	32.36
KRH58481	Soybean	cytosol	11.74	30.27
KRH42362	Soybean	cytosol, endoplasmic reticulum	11.65	29.88
KRH71559	Soybean	cytosol	31.57	29.66
KRH40573	Soybean	cytosol, plastid	13.76	29.42
KRH00594	Soybean	cytosol, plastid	13.57	28.72
KRH31896	Soybean	nucleus	32.53	27.57
KRH03951	Soybean	nucleus	32.34	27.45
KRH25197	Soybean	cytosol	11.45	27.42
KRH31895	Soybean	nucleus	32.82	27.35
KRH63756	Soybean	cytosol, plastid	32.44	27.31
KRH30451	Soybean	cytosol	11.36	27.19
KRH71560	Soybean	nucleus	32.44	27.11
KRH54195	Soybean	plastid	32.15	26.98
KRH26619	Soybean	nucleus	11.26	26.83
KRH09800	Soybean	cytosol	11.93	25.94
KRH57680	Soybean	nucleus	15.88	25.04
KRH47511	Soybean	cytosol	12.51	24.48
KRG94255	Soybean	nucleus	15.5	24.43
KRH44395	Soybean	cytosol	12.51	24.39
KRH22691	Soybean	cytosol	9.53	24.21

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100802939	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	EMBL:ACUP02007172
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_12G027500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016787	GO:GO:0016887	UniProt:K7LSQ6	EnsemblPlants:KRH24190	ProteinID:KRH24190	ProteinID:KRH24190.1
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF95	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0002958FA7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:1986670..2005936

Molecular Weight (calculated)

117508.0 Da

IEP (calculated)

6.493

GRAVY (calculated)

-0.561

Length

1039 amino acids

Sequence
(BLAST)

0001: MYLRRIQCRD RTWALVLQPS KYFFRPRFSD QRYFQSLSPK TTVEEYASHG RIIRKHLLGL DLCRHTSSRN SFTVPDRRPS LCLNSTQLRA YSSESDGRNA
0101: SEDKHVNVND GANFDKGQKQ QEKFGKDVKY SNAHARLGEQ EQEEWLNNEK LSIESKRRES PFLTTRDKFK KEFMRRIIPW EKINISWDTF PYHIHENTKN
0201: LLVECAASHL RHNKLASSFG SRLTSSSGRI LLQSIPGTEL YRERLVRALA QDLQVPLLVL DNSILAPYDI DDDLSSDYES DEDNAESGEE GSLESENEDD
0301: NDATNEEEWA SSTETKSDAS DNEDAIAAAE AHLKKVKAAV IRKLVPYNVG EFEKIVSGES ENSESSKSND AKSSDQSGCQ LRKGDRVKYI GPSVKVRDED
0401: RIILGKIPIS DGTTNAYTII HGRPLTKGQR GEVYEVNGDR VAVILDINED RVNEGEVENL NEDHTKPPIY WIHVKDIEND LDAQSHDCYI AVEALCEVLH
0501: RKQPLIVYFP DSSQWLHKAV PKSHRNEFFH KVEEMFDRLS GPIVFICGQN KIQSGSKEKE EFTMILPNFG RVAKLPLSLK HLTEGIKGDK TSEDDEINKL
0601: FSNVLSILPP KDENLLATFK KQLEEDKKIV TSRSNLNALR KVLEEHQLSC MDLLLVNTDS IILTKHKAEK VVGWAKNHYL SSCLLPSIKG ERLYLPRESL
0701: EIAVSRLKGQ ETMSRKPSQS LKNLAKDEFE SNFISAVVPP GEIGVKFDDI GALEDVKKAL NELVILPMRR PELFSRGNLL RPCKGILLFG PPGTGKTLLA
0801: KALATEAGAN FISITGSTLT SKWFGDAEKL TKALFSFASK LAPVIVFVDE VDSLLGARGG AFEHEATRRM RNEFMAAWDG LRSKENQRIL ILGATNRPFD
0901: LDDAVIRRLP RRIYVDLPDA ENRMKILRIF LAQENLNFDF QFDKLANFTD GYSGSDLKNL CIAAAYRPVQ ELLEEEKKRA SNDTTSVLRP LNLDDFIQAK
1001: SKVGPSVAYD ATSMNELRKW NEMYGEGGSR TKAPFGFGT

Best Arabidopsis Sequence Match ( AT3G19740.1 )
(BLAST)

001: MYTRALKRNQ RWGLVLQQAK YLVRPVVRDY TVSRYCGFTN KLTNSENLTR KSLLGSFSPR GGTIASGNHL SILKNSQLRS FSSEGDGRNA SEDKHISLNK
101: ENGVDDGKTG KEKSNNGVGH LDSHAQLGEQ DQIEWLNNEK LASECKKKES PFVNRRERFK NEFLRRIQPW EKIQLSWETF PYYIHDHTKD ILVECVTSHI
201: RQKNAASIYG ARLDSSSGRI LLQSVPGTEL YRERLVRALA RDVQVPLLVL DSSVLAPYDF ADDYNEESES DGENAEAEAD ESTTESDAEE DSSAQSEEDS
301: EAKADGSDSE EACLEVSEEA IKKIVPKLEE FEKLVAEELH GEACEAAAVE HSDKARRPAK KGDRVKYVGP SKKADAKHRP LSSGQRGEVY EVNGNRVAVI
401: FDIGGDTSSE GGDKKSTEHS HKLHMHWIDV GDLKHDLDMQ AEDGYIALEA LSEVLHSTQP LIVYFPDSSQ WLSRAVPKSK QNEFVDKVQE MFDKLSSPVV
501: MICGRNKIET GSKEREKFTM ILPNFGRLAK LPLPLKRLTE GLTGRKTSED NEIYKLFTNV MNLVPPKEEE NLIVFNKQLG EDRRIVMSRS NLNELLKALE
601: ENELLCTDLY QVNTDGVILT KQRAEKVIGW ARNHYLSSCP SPSIKEGRLI LPRESIEISV KRLKAQEDIS RKPTQNLKNI AKDEFETNFV SAVVAPGEIG
701: VKFDDIGALE HVKKTLNELV ILPMRRPELF TRGNLLRPCK GILLFGPPGT GKTLLAKALA TEAGANFISI TGSTLTSKWF GDAEKLTKAL FSFASKLAPV
801: IIFVDEVDSL LGARGGAFEH EATRRMRNEF MAAWDGLRSK DSQRILILGA TNRPFDLDDA VIRRLPRRIY VDLPDAENRL KILKIFLTPE NLETGFEFDK
901: LAKETEGYSG SDLKNLCIAA AYRPVQELLQ EENKDSVTNA SPDLRPLSLD DFIQSKAKVS PSVAYDATTM NELRKWNEQY GEGGTRTKSP FGF

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JCC9]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.