Factsheet for Zm00001d011611_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01274	Sorghum	cytosol	97.09	96.53
Os01t0683100-01	Rice	extracellular	92.44	91.91
TraesCS3B01G299100.1	Wheat	cytosol	91.09	90.21
TraesCS3D01G265900.1	Wheat	cytosol	91.09	90.21
TraesCS3A01G265700.1	Wheat	cytosol	90.89	90.02
HORVU3Hr1G063300.1	Barley	cytosol	90.7	89.83
AT1G80350.1	Thale cress	cytosol	81.01	79.92
Solyc06g066810.2.1	Tomato	cytosol	80.23	79.92
PGSC0003DMT400042654	Potato	cytosol	79.84	79.54
CDY37590	Canola	cytosol	78.68	79.45
VIT_09s0002g05260.t01	Wine grape	cytosol	80.04	79.27
CDY38662	Canola	cytosol	78.68	78.68
KRH09800	Soybean	cytosol	72.87	78.66
KXG19781	Sorghum	cytosol	80.62	78.2
Bra008479.1-P	Field mustard	cytosol	79.65	77.84
CDX79393	Canola	cytosol	79.46	77.5
CDY57698	Canola	cytosol	79.26	77.02
KRH44395	Soybean	cytosol	79.46	76.92
Bra003561.1-P	Field mustard	cytosol	79.07	76.84
KRH47511	Soybean	cytosol	79.07	76.84
GSMUA_Achr4P00810_001	Banana	cytosol	81.59	68.9
Zm00001d043841_P003	Maize	cytosol	97.48	55.64
Zm00001d029385_P001	Maize	cytosol	14.53	39.27
Zm00001d043410_P002	Maize	cytosol	29.46	36.63
Zm00001d049686_P001	Maize	plastid	16.47	35.56
Zm00001d039904_P006	Maize	cytosol	29.46	34.94
Zm00001d008596_P005	Maize	cytosol	29.65	33.63
Zm00001d011563_P019	Maize	mitochondrion	30.04	29.52
Zm00001d045483_P002	Maize	cytosol	27.91	28.92
Zm00001d014775_P002	Maize	plastid	20.74	27.37
Zm00001d036410_P002	Maize	plastid	21.51	23.32
Zm00001d041083_P005	Maize	nucleus	30.23	23.01
Zm00001d039315_P003	Maize	vacuole	27.91	17.12
Zm00001d008983_P001	Maize	vacuole	27.52	16.78
Zm00001d009702_P001	Maize	endoplasmic reticulum	26.94	16.49
Zm00001d052248_P009	Maize	mitochondrion	25.78	13.48
Zm00001d007139_P007	Maize	cytosol, plastid	26.36	12.87
Zm00001d047494_P007	Maize	cytosol	27.13	12.66
Zm00001d029120_P004	Maize	cytosol	27.52	12.61
Zm00001d007698_P002	Maize	plastid	28.1	11.45
Zm00001d048689_P004	Maize	plastid	27.52	11.32

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100382477	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:AQK97544.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:BT064501	UniProt:C0P882	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0051013	InterPro:KATNA1	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0001948F1A
InterPro:Vps4_C	EnsemblPlantsGene:Zm00001d011611	EnsemblPlants:Zm00001d011611_P005	EnsemblPlants:Zm00001d011611_T005	SEG:seg	:

Description

Katanin p60 ATPase-containing subunit A1

Coordinates

chr8:+:155860195..155866759

Molecular Weight (calculated)

56830.3 Da

IEP (calculated)

8.337

GRAVY (calculated)

-0.536

Length

516 amino acids

Sequence
(BLAST)

001: MANPLAGLQD HLKLARDYAL EGLYDTSIIF FDGAIAQINK HLTTLDDALI RTKWMNCKKA ISEEVEIVKQ LDAQLKSLKE APGTRRSSSP PIRSNKSFVF
101: QPLDEYPTSS PAPFDDPDVW APPRDTPTRR PTRGQSSARK SSQDGAWARG SSRTGTPSRS AKPNGIKGGA VKSTASNSSV RKGKQSSNKA DSTSSDAEEG
201: KSKKGQYEGP DMDLAAMLER DVLDSTPGVR WDDVAGLSEA KRLLEEAVVL PLWMPEYFQG IRRPWKGVLM FGPPGTGKTL LAKAVATECG TTFFNVSSAT
301: LASKWRGESE RMVRCLFDLA RAYAPSTIFI DEIDSLCTSR GASGEHESSR RVKSELLVQI DGVNNSSTTD DGQPKIVMVL AATNFPWDID EALRRRLEKR
401: IYIPLPDFES RKALININLR TVQIAADVNI DEVARRTEGY SGDDLTNVCR DASMNGMRRK IAGKTRDEIK NMSKDEIAKD PVAMCDFVEA LVKVQKSVSP
501: SDIEKHEKWM AEFGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.